Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15395

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15385 and CSW01_15390 are separated by 3 nucleotidesCSW01_15390 and CSW01_15395 are separated by 103 nucleotidesCSW01_15395 and CSW01_15400 are separated by 41 nucleotidesCSW01_15400 and CSW01_15405 are separated by 81 nucleotides CSW01_15385: CSW01_15385 - threonine--tRNA ligase, at 306,048 to 307,976 _15385 CSW01_15390: CSW01_15390 - translation initiation factor IF-3, at 307,980 to 308,531 _15390 CSW01_15395: CSW01_15395 - 50S ribosomal protein L35, at 308,635 to 308,829 _15395 CSW01_15400: CSW01_15400 - 50S ribosomal protein L20, at 308,871 to 309,224 _15400 CSW01_15405: CSW01_15405 - integron integrase, at 309,306 to 310,268 _15405 Position (kb) 308 309Strain fitness (log2 ratio) -1 0 1at 309.332 kb on - strandat 309.369 kb on - strandat 309.538 kb on - strand, within CSW01_15405at 309.623 kb on + strand, within CSW01_15405

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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309,332 - +0.9
309,369 - +0.1
309,538 - CSW01_15405 0.24 -1.2
309,623 + CSW01_15405 0.33 -0.4

Or see this region's nucleotide sequence