Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14015 and CSW01_14020 are separated by 14 nucleotides CSW01_14020 and CSW01_14025 are separated by 73 nucleotides CSW01_14025 and CSW01_14030 are separated by 43 nucleotides CSW01_14030 and CSW01_14035 are separated by 8 nucleotides CSW01_14035 and CSW01_14040 are separated by 189 nucleotides
CSW01_14015: CSW01_14015 - ATP synthase subunit delta, at 2,985,452 to 2,985,985
_14015
CSW01_14020: CSW01_14020 - ATP synthase subunit B, at 2,986,000 to 2,986,470
_14020
CSW01_14025: CSW01_14025 - ATP synthase subunit C, at 2,986,544 to 2,986,801
_14025
CSW01_14030: CSW01_14030 - ATP synthase subunit A, at 2,986,845 to 2,987,657
_14030
CSW01_14035: CSW01_14035 - ATP synthase I, at 2,987,666 to 2,988,055
_14035
CSW01_14040: CSW01_14040 - chromosome partitioning protein ParB, at 2,988,245 to 2,989,126
_14040
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-1
0
1 at 2988.154 kb on - strand at 2988.248 kb on + strand at 2988.289 kb on + strand at 2988.341 kb on + strand, within CSW01_14040 at 2988.509 kb on + strand, within CSW01_14040 at 2988.517 kb on - strand, within CSW01_14040 at 2988.519 kb on - strand, within CSW01_14040 at 2988.524 kb on + strand, within CSW01_14040 at 2988.524 kb on + strand, within CSW01_14040 at 2988.524 kb on + strand, within CSW01_14040 at 2988.534 kb on + strand, within CSW01_14040 at 2988.539 kb on + strand, within CSW01_14040 at 2988.625 kb on - strand, within CSW01_14040 at 2988.625 kb on - strand, within CSW01_14040
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,988,154 - +0.3 2,988,248 + -1.1 2,988,289 + -0.0 2,988,341 + CSW01_14040 0.11 +0.3 2,988,509 + CSW01_14040 0.30 +0.1 2,988,517 - CSW01_14040 0.31 -0.5 2,988,519 - CSW01_14040 0.31 -0.7 2,988,524 + CSW01_14040 0.32 -0.2 2,988,524 + CSW01_14040 0.32 -0.6 2,988,524 + CSW01_14040 0.32 +1.0 2,988,534 + CSW01_14040 0.33 +0.7 2,988,539 + CSW01_14040 0.33 -1.0 2,988,625 - CSW01_14040 0.43 -0.4 2,988,625 - CSW01_14040 0.43 -0.4
Or see this region's nucleotide sequence