Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14030

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14015 and CSW01_14020 are separated by 14 nucleotidesCSW01_14020 and CSW01_14025 are separated by 73 nucleotidesCSW01_14025 and CSW01_14030 are separated by 43 nucleotidesCSW01_14030 and CSW01_14035 are separated by 8 nucleotidesCSW01_14035 and CSW01_14040 are separated by 189 nucleotides CSW01_14015: CSW01_14015 - ATP synthase subunit delta, at 2,985,452 to 2,985,985 _14015 CSW01_14020: CSW01_14020 - ATP synthase subunit B, at 2,986,000 to 2,986,470 _14020 CSW01_14025: CSW01_14025 - ATP synthase subunit C, at 2,986,544 to 2,986,801 _14025 CSW01_14030: CSW01_14030 - ATP synthase subunit A, at 2,986,845 to 2,987,657 _14030 CSW01_14035: CSW01_14035 - ATP synthase I, at 2,987,666 to 2,988,055 _14035 CSW01_14040: CSW01_14040 - chromosome partitioning protein ParB, at 2,988,245 to 2,989,126 _14040 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -1 0 1at 2988.154 kb on - strandat 2988.248 kb on + strandat 2988.289 kb on + strandat 2988.341 kb on + strand, within CSW01_14040at 2988.509 kb on + strand, within CSW01_14040at 2988.517 kb on - strand, within CSW01_14040at 2988.519 kb on - strand, within CSW01_14040at 2988.524 kb on + strand, within CSW01_14040at 2988.524 kb on + strand, within CSW01_14040at 2988.524 kb on + strand, within CSW01_14040at 2988.534 kb on + strand, within CSW01_14040at 2988.539 kb on + strand, within CSW01_14040at 2988.625 kb on - strand, within CSW01_14040at 2988.625 kb on - strand, within CSW01_14040

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,988,154 - +0.3
2,988,248 + -1.1
2,988,289 + -0.0
2,988,341 + CSW01_14040 0.11 +0.3
2,988,509 + CSW01_14040 0.30 +0.1
2,988,517 - CSW01_14040 0.31 -0.5
2,988,519 - CSW01_14040 0.31 -0.7
2,988,524 + CSW01_14040 0.32 -0.2
2,988,524 + CSW01_14040 0.32 -0.6
2,988,524 + CSW01_14040 0.32 +1.0
2,988,534 + CSW01_14040 0.33 +0.7
2,988,539 + CSW01_14040 0.33 -1.0
2,988,625 - CSW01_14040 0.43 -0.4
2,988,625 - CSW01_14040 0.43 -0.4

Or see this region's nucleotide sequence