Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14000

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13990 and CSW01_13995 are separated by 246 nucleotidesCSW01_13995 and CSW01_14000 are separated by 18 nucleotidesCSW01_14000 and CSW01_14005 are separated by 34 nucleotidesCSW01_14005 and CSW01_14010 are separated by 44 nucleotides CSW01_13990: CSW01_13990 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 2,979,499 to 2,980,860 _13990 CSW01_13995: CSW01_13995 - ATP synthase epsilon chain, at 2,981,107 to 2,981,529 _13995 CSW01_14000: CSW01_14000 - ATP synthase subunit beta, at 2,981,548 to 2,982,951 _14000 CSW01_14005: CSW01_14005 - ATP synthase subunit gamma, at 2,982,986 to 2,983,852 _14005 CSW01_14010: CSW01_14010 - ATP synthase subunit alpha, at 2,983,897 to 2,985,438 _14010 Position (kb) 2981 2982 2983Strain fitness (log2 ratio) -1 0 1at 2980.901 kb on - strandat 2981.047 kb on + strandat 2981.055 kb on - strandat 2981.055 kb on - strandat 2981.553 kb on - strandat 2983.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,980,901 - -0.1
2,981,047 + +0.3
2,981,055 - +0.1
2,981,055 - +0.0
2,981,553 - -0.9
2,983,860 - -1.1

Or see this region's nucleotide sequence