Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_13925 and CSW01_13930 are separated by 335 nucleotides CSW01_13930 and CSW01_13935 are separated by 30 nucleotides CSW01_13935 and CSW01_13940 are separated by 19 nucleotides CSW01_13940 and CSW01_13945 are separated by 63 nucleotides CSW01_13945 and CSW01_13950 are separated by 156 nucleotides CSW01_13950 and CSW01_13955 are separated by 147 nucleotides CSW01_13955 and CSW01_13960 are separated by 22 nucleotides
CSW01_13925: CSW01_13925 - 23S ribosomal RNA, at 2,965,291 to 2,968,207
_13925
CSW01_13930: CSW01_13930 - tRNA-Val, at 2,968,543 to 2,968,618
_13930
CSW01_13935: CSW01_13935 - tRNA-Lys, at 2,968,649 to 2,968,723
_13935
CSW01_13940: CSW01_13940 - tRNA-Glu, at 2,968,743 to 2,968,818
_13940
CSW01_13945: CSW01_13945 - 16S ribosomal RNA, at 2,968,882 to 2,970,432
_13945
CSW01_13950: CSW01_13950 - hypothetical protein, at 2,970,589 to 2,970,729
_13950
CSW01_13955: CSW01_13955 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 2,970,877 to 2,971,401
_13955
CSW01_13960: CSW01_13960 - potassium uptake protein TrkH, at 2,971,424 to 2,972,881
_13960
Position (kb)
2968
2969
2970
2971 Strain fitness (log2 ratio)
-1
0
1 at 2970.706 kb on + strand, within CSW01_13950 at 2970.761 kb on - strand at 2970.790 kb on - strand at 2971.403 kb on + strand at 2971.403 kb on + strand at 2971.410 kb on + strand at 2971.411 kb on - strand at 2971.411 kb on - strand at 2971.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,970,706 + CSW01_13950 0.83 +0.2 2,970,761 - +0.0 2,970,790 - +0.2 2,971,403 + -0.3 2,971,403 + -0.5 2,971,410 + -0.4 2,971,411 - +0.9 2,971,411 - +0.0 2,971,432 + -0.0
Or see this region's nucleotide sequence