Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13945

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13925 and CSW01_13930 are separated by 335 nucleotidesCSW01_13930 and CSW01_13935 are separated by 30 nucleotidesCSW01_13935 and CSW01_13940 are separated by 19 nucleotidesCSW01_13940 and CSW01_13945 are separated by 63 nucleotidesCSW01_13945 and CSW01_13950 are separated by 156 nucleotidesCSW01_13950 and CSW01_13955 are separated by 147 nucleotidesCSW01_13955 and CSW01_13960 are separated by 22 nucleotides CSW01_13925: CSW01_13925 - 23S ribosomal RNA, at 2,965,291 to 2,968,207 _13925 CSW01_13930: CSW01_13930 - tRNA-Val, at 2,968,543 to 2,968,618 _13930 CSW01_13935: CSW01_13935 - tRNA-Lys, at 2,968,649 to 2,968,723 _13935 CSW01_13940: CSW01_13940 - tRNA-Glu, at 2,968,743 to 2,968,818 _13940 CSW01_13945: CSW01_13945 - 16S ribosomal RNA, at 2,968,882 to 2,970,432 _13945 CSW01_13950: CSW01_13950 - hypothetical protein, at 2,970,589 to 2,970,729 _13950 CSW01_13955: CSW01_13955 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 2,970,877 to 2,971,401 _13955 CSW01_13960: CSW01_13960 - potassium uptake protein TrkH, at 2,971,424 to 2,972,881 _13960 Position (kb) 2968 2969 2970 2971Strain fitness (log2 ratio) -1 0 1at 2970.706 kb on + strand, within CSW01_13950at 2970.761 kb on - strandat 2970.790 kb on - strandat 2971.403 kb on + strandat 2971.403 kb on + strandat 2971.410 kb on + strandat 2971.411 kb on - strandat 2971.411 kb on - strandat 2971.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,970,706 + CSW01_13950 0.83 +0.2
2,970,761 - +0.0
2,970,790 - +0.2
2,971,403 + -0.3
2,971,403 + -0.5
2,971,410 + -0.4
2,971,411 - +0.9
2,971,411 - +0.0
2,971,432 + -0.0

Or see this region's nucleotide sequence