Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13915

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13890 and CSW01_13895 are separated by 280 nucleotidesCSW01_13895 and CSW01_13900 are separated by 5 nucleotidesCSW01_13900 and CSW01_13905 are separated by 30 nucleotidesCSW01_13905 and CSW01_13910 are separated by 19 nucleotidesCSW01_13910 and CSW01_13915 are separated by 63 nucleotidesCSW01_13915 and CSW01_13920 are separated by 357 nucleotidesCSW01_13920 and CSW01_13925 are separated by 107 nucleotides CSW01_13890: CSW01_13890 - 23S ribosomal RNA, at 2,959,547 to 2,962,460 _13890 CSW01_13895: CSW01_13895 - tRNA-Ala, at 2,962,741 to 2,962,816 _13895 CSW01_13900: CSW01_13900 - tRNA-Val, at 2,962,822 to 2,962,897 _13900 CSW01_13905: CSW01_13905 - tRNA-Lys, at 2,962,928 to 2,963,002 _13905 CSW01_13910: CSW01_13910 - tRNA-Glu, at 2,963,022 to 2,963,097 _13910 CSW01_13915: CSW01_13915 - 16S ribosomal RNA, at 2,963,161 to 2,964,710 _13915 CSW01_13920: CSW01_13920 - 5S ribosomal RNA, at 2,965,068 to 2,965,183 _13920 CSW01_13925: CSW01_13925 - 23S ribosomal RNA, at 2,965,291 to 2,968,207 _13925 Position (kb) 2963 2964 2965Strain fitness (log2 ratio) -1 0 1at 2965.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,965,022 + +0.1

Or see this region's nucleotide sequence