Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13785

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13780 and CSW01_13785 overlap by 1 nucleotidesCSW01_13785 and CSW01_13790 overlap by 4 nucleotides CSW01_13780: CSW01_13780 - type II secretion system protein GspF, at 2,933,869 to 2,935,089 _13780 CSW01_13785: CSW01_13785 - type II secretion system protein GspE, at 2,935,089 to 2,936,600 _13785 CSW01_13790: CSW01_13790 - type II secretion system protein GspD, at 2,936,597 to 2,938,621 _13790 Position (kb) 2935 2936 2937Strain fitness (log2 ratio) -1 0 1at 2936.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,936,625 - -0.7

Or see this region's nucleotide sequence