Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13775

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13760 and CSW01_13765 overlap by 14 nucleotidesCSW01_13765 and CSW01_13770 overlap by 11 nucleotidesCSW01_13770 and CSW01_13775 are separated by 33 nucleotidesCSW01_13775 and CSW01_13780 are separated by 40 nucleotides CSW01_13760: CSW01_13760 - type II secretion system protein GspJ, at 2,931,775 to 2,932,440 _13760 CSW01_13765: CSW01_13765 - type II secretion system protein GspI, at 2,932,427 to 2,932,780 _13765 CSW01_13770: CSW01_13770 - type II secretion system protein H, at 2,932,770 to 2,933,354 _13770 CSW01_13775: CSW01_13775 - type II secretion system protein GspG, at 2,933,388 to 2,933,828 _13775 CSW01_13780: CSW01_13780 - type II secretion system protein GspF, at 2,933,869 to 2,935,089 _13780 Position (kb) 2933 2934Strain fitness (log2 ratio) -2 -1 0 1at 2932.442 kb on + strandat 2932.797 kb on - strandat 2933.358 kb on - strandat 2933.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,932,442 + -2.4
2,932,797 - +0.2
2,933,358 - +0.0
2,933,358 - +0.2

Or see this region's nucleotide sequence