Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_13750 and CSW01_13755 overlap by 44 nucleotides CSW01_13755 and CSW01_13760 overlap by 11 nucleotides CSW01_13760 and CSW01_13765 overlap by 14 nucleotides CSW01_13765 and CSW01_13770 overlap by 11 nucleotides CSW01_13770 and CSW01_13775 are separated by 33 nucleotides
CSW01_13750: CSW01_13750 - type II secretion system protein GspL, at 2,929,595 to 2,930,818
_13750
CSW01_13755: CSW01_13755 - type II secretion system protein K, at 2,930,775 to 2,931,785
_13755
CSW01_13760: CSW01_13760 - type II secretion system protein GspJ, at 2,931,775 to 2,932,440
_13760
CSW01_13765: CSW01_13765 - type II secretion system protein GspI, at 2,932,427 to 2,932,780
_13765
CSW01_13770: CSW01_13770 - type II secretion system protein H, at 2,932,770 to 2,933,354
_13770
CSW01_13775: CSW01_13775 - type II secretion system protein GspG, at 2,933,388 to 2,933,828
_13775
Position (kb)
2931
2932
2933 Strain fitness (log2 ratio)
-2
-1
0
1 at 2930.798 kb on - strand at 2930.821 kb on - strand at 2931.815 kb on + strand at 2931.831 kb on + strand at 2931.831 kb on + strand at 2931.831 kb on + strand at 2932.442 kb on + strand at 2932.797 kb on - strand at 2933.358 kb on - strand at 2933.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,930,798 - -0.1 2,930,821 - +0.2 2,931,815 + +0.0 2,931,831 + +0.3 2,931,831 + -0.4 2,931,831 + +0.4 2,932,442 + -2.4 2,932,797 - +0.2 2,933,358 - +0.0 2,933,358 - +0.2
Or see this region's nucleotide sequence