Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13755

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13750 and CSW01_13755 overlap by 44 nucleotidesCSW01_13755 and CSW01_13760 overlap by 11 nucleotidesCSW01_13760 and CSW01_13765 overlap by 14 nucleotidesCSW01_13765 and CSW01_13770 overlap by 11 nucleotides CSW01_13750: CSW01_13750 - type II secretion system protein GspL, at 2,929,595 to 2,930,818 _13750 CSW01_13755: CSW01_13755 - type II secretion system protein K, at 2,930,775 to 2,931,785 _13755 CSW01_13760: CSW01_13760 - type II secretion system protein GspJ, at 2,931,775 to 2,932,440 _13760 CSW01_13765: CSW01_13765 - type II secretion system protein GspI, at 2,932,427 to 2,932,780 _13765 CSW01_13770: CSW01_13770 - type II secretion system protein H, at 2,932,770 to 2,933,354 _13770 Position (kb) 2930 2931 2932Strain fitness (log2 ratio) -2 -1 0 1at 2930.798 kb on - strandat 2930.821 kb on - strandat 2931.815 kb on + strandat 2931.831 kb on + strandat 2931.831 kb on + strandat 2931.831 kb on + strandat 2932.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,930,798 - -0.1
2,930,821 - +0.2
2,931,815 + +0.0
2,931,831 + +0.3
2,931,831 + -0.4
2,931,831 + +0.4
2,932,442 + -2.4

Or see this region's nucleotide sequence