Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_13125 and CSW01_13130 are separated by 16 nucleotides CSW01_13130 and CSW01_13135 overlap by 4 nucleotides CSW01_13135 and CSW01_13140 are separated by 16 nucleotides CSW01_13140 and CSW01_13145 are separated by 14 nucleotides CSW01_13145 and CSW01_13150 are separated by 470 nucleotides
CSW01_13125: CSW01_13125 - 50S ribosomal protein L2, at 2,793,488 to 2,794,312
_13125
CSW01_13130: CSW01_13130 - 50S ribosomal protein L23, at 2,794,329 to 2,794,631
_13130
CSW01_13135: CSW01_13135 - 50S ribosomal protein L4, at 2,794,628 to 2,795,230
_13135
CSW01_13140: CSW01_13140 - 50S ribosomal protein L3, at 2,795,247 to 2,795,876
_13140
CSW01_13145: CSW01_13145 - 30S ribosomal protein S10, at 2,795,891 to 2,796,202
_13145
CSW01_13150: CSW01_13150 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,796,673 to 2,797,416
_13150
Position (kb)
2795
2796 Strain fitness (log2 ratio)
-1
0
1 at 2796.442 kb on - strand at 2796.562 kb on - strand at 2796.616 kb on - strand at 2796.683 kb on + strand at 2796.727 kb on - strand at 2796.743 kb on - strand at 2796.743 kb on - strand at 2796.868 kb on + strand, within CSW01_13150
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,796,442 - -1.7 2,796,562 - +0.5 2,796,616 - -0.2 2,796,683 + -0.2 2,796,727 - -1.0 2,796,743 - -1.2 2,796,743 - +0.8 2,796,868 + CSW01_13150 0.26 +1.2
Or see this region's nucleotide sequence