Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12795

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12790 and CSW01_12795 overlap by 1 nucleotidesCSW01_12795 and CSW01_12800 overlap by 4 nucleotidesCSW01_12800 and CSW01_12805 overlap by 65 nucleotides CSW01_12790: CSW01_12790 - KpsF/GutQ family sugar-phosphate isomerase, at 2,739,974 to 2,740,954 _12790 CSW01_12795: CSW01_12795 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 2,740,954 to 2,741,511 _12795 CSW01_12800: CSW01_12800 - LPS export ABC transporter periplasmic protein LptC, at 2,741,508 to 2,742,071 _12800 CSW01_12805: CSW01_12805 - lipopolysaccharide transport periplasmic protein LptA, at 2,742,007 to 2,742,546 _12805 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1at 2739.959 kb on + strandat 2739.959 kb on + strandat 2739.959 kb on + strandat 2739.967 kb on - strandat 2740.604 kb on + strand, within CSW01_12790at 2740.933 kb on + strandat 2740.958 kb on + strandat 2740.986 kb on + strandat 2741.009 kb on + strandat 2741.497 kb on + strandat 2741.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,739,959 + -0.2
2,739,959 + +1.1
2,739,959 + -0.3
2,739,967 - -0.4
2,740,604 + CSW01_12790 0.64 -0.1
2,740,933 + -2.6
2,740,958 + -0.9
2,740,986 + -0.4
2,741,009 + -0.1
2,741,497 + -0.3
2,741,497 + -0.2

Or see this region's nucleotide sequence