Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12465 and CSW01_12470 are separated by 112 nucleotides CSW01_12470 and CSW01_12475 overlap by 4 nucleotides CSW01_12475 and CSW01_12480 overlap by 4 nucleotides
CSW01_12465: CSW01_12465 - elongation factor 4, at 2,676,606 to 2,678,399
_12465
CSW01_12470: CSW01_12470 - transcriptional regulator, at 2,678,512 to 2,678,982
_12470
CSW01_12475: CSW01_12475 - sigma-E factor regulatory protein RseB, at 2,678,979 to 2,679,944
_12475
CSW01_12480: CSW01_12480 - sigma-E factor negative regulatory protein RseA, at 2,679,941 to 2,680,579
_12480
Position (kb)
2678
2679 Strain fitness (log2 ratio)
-2
-1
0
1 at 2677.583 kb on - strand, within CSW01_12465 at 2677.668 kb on - strand, within CSW01_12465 at 2677.725 kb on - strand, within CSW01_12465 at 2677.995 kb on - strand, within CSW01_12465 at 2678.087 kb on - strand, within CSW01_12465 at 2678.103 kb on - strand, within CSW01_12465 at 2678.167 kb on - strand, within CSW01_12465 at 2678.217 kb on - strand, within CSW01_12465 at 2678.229 kb on - strand at 2678.229 kb on - strand at 2679.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,677,583 - CSW01_12465 0.54 -1.5 2,677,668 - CSW01_12465 0.59 +0.7 2,677,725 - CSW01_12465 0.62 -0.6 2,677,995 - CSW01_12465 0.77 -1.5 2,678,087 - CSW01_12465 0.83 -0.6 2,678,103 - CSW01_12465 0.83 -1.8 2,678,167 - CSW01_12465 0.87 -0.9 2,678,217 - CSW01_12465 0.90 -0.4 2,678,229 - -1.1 2,678,229 - -0.6 2,679,968 - -1.1
Or see this region's nucleotide sequence