Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12460

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12450 and CSW01_12455 overlap by 8 nucleotidesCSW01_12455 and CSW01_12460 are separated by 31 nucleotidesCSW01_12460 and CSW01_12465 are separated by 91 nucleotides CSW01_12450: CSW01_12450 - GTPase Era, at 2,673,939 to 2,674,916 _12450 CSW01_12455: CSW01_12455 - ribonuclease 3, at 2,674,909 to 2,675,586 _12455 CSW01_12460: CSW01_12460 - signal peptidase I, at 2,675,618 to 2,676,514 _12460 CSW01_12465: CSW01_12465 - elongation factor 4, at 2,676,606 to 2,678,399 _12465 Position (kb) 2675 2676 2677Strain fitness (log2 ratio) -2 -1 0 1at 2676.934 kb on + strand, within CSW01_12465at 2676.934 kb on + strand, within CSW01_12465at 2676.942 kb on - strand, within CSW01_12465at 2676.988 kb on + strand, within CSW01_12465at 2677.104 kb on - strand, within CSW01_12465at 2677.129 kb on + strand, within CSW01_12465at 2677.187 kb on - strand, within CSW01_12465at 2677.306 kb on - strand, within CSW01_12465at 2677.311 kb on - strand, within CSW01_12465at 2677.396 kb on - strand, within CSW01_12465

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,676,934 + CSW01_12465 0.18 -2.4
2,676,934 + CSW01_12465 0.18 -1.0
2,676,942 - CSW01_12465 0.19 -0.2
2,676,988 + CSW01_12465 0.21 -1.3
2,677,104 - CSW01_12465 0.28 -0.5
2,677,129 + CSW01_12465 0.29 -2.0
2,677,187 - CSW01_12465 0.32 -1.3
2,677,306 - CSW01_12465 0.39 -2.2
2,677,311 - CSW01_12465 0.39 -0.9
2,677,396 - CSW01_12465 0.44 +0.0

Or see this region's nucleotide sequence