Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12190

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12185 and CSW01_12190 overlap by 35 nucleotidesCSW01_12190 and CSW01_12195 overlap by 4 nucleotidesCSW01_12195 and CSW01_12200 are separated by 9 nucleotides CSW01_12185: CSW01_12185 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,607,429 to 2,608,967 _12185 CSW01_12190: CSW01_12190 - penicillin-binding protein 3, at 2,608,933 to 2,610,675 _12190 CSW01_12195: CSW01_12195 - cell division protein FtsL, at 2,610,672 to 2,610,992 _12195 CSW01_12200: CSW01_12200 - ribosomal RNA small subunit methyltransferase H, at 2,611,002 to 2,611,952 _12200 Position (kb) 2608 2609 2610 2611Strain fitness (log2 ratio) -1 0 1at 2610.673 kb on + strandat 2611.080 kb on - strandat 2611.277 kb on - strand, within CSW01_12200at 2611.589 kb on - strand, within CSW01_12200

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,610,673 + +0.3
2,611,080 - -1.0
2,611,277 - CSW01_12200 0.29 -0.5
2,611,589 - CSW01_12200 0.62 -1.2

Or see this region's nucleotide sequence