Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12145 and CSW01_12150 overlap by 8 nucleotides CSW01_12150 and CSW01_12155 are separated by 181 nucleotides CSW01_12155 and CSW01_12160 are separated by 13 nucleotides
CSW01_12145: CSW01_12145 - cell division protein FtsA, at 2,597,692 to 2,598,954
_12145
CSW01_12150: CSW01_12150 - cell division protein FtsQ, at 2,598,947 to 2,599,729
_12150
CSW01_12155: CSW01_12155 - UDP-N-acetylmuramate--L-alanine ligase, at 2,599,911 to 2,601,371
_12155
CSW01_12160: CSW01_12160 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,601,385 to 2,602,446
_12160
Position (kb)
2599
2600
2601
2602 Strain fitness (log2 ratio)
-1
0
1 at 2598.982 kb on - strand at 2599.810 kb on - strand at 2599.814 kb on + strand at 2599.827 kb on - strand at 2599.898 kb on + strand at 2599.898 kb on + strand at 2599.898 kb on + strand at 2599.898 kb on + strand at 2599.906 kb on - strand at 2599.906 kb on - strand at 2599.908 kb on + strand at 2599.951 kb on + strand at 2599.951 kb on + strand at 2599.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,598,982 - +0.1 2,599,810 - -0.1 2,599,814 + -0.6 2,599,827 - -0.3 2,599,898 + -0.5 2,599,898 + -0.2 2,599,898 + +0.3 2,599,898 + +0.2 2,599,906 - -0.1 2,599,906 - +0.1 2,599,908 + +0.6 2,599,951 + +0.1 2,599,951 + +0.1 2,599,957 - -0.7
Or see this region's nucleotide sequence