Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12155

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12145 and CSW01_12150 overlap by 8 nucleotidesCSW01_12150 and CSW01_12155 are separated by 181 nucleotidesCSW01_12155 and CSW01_12160 are separated by 13 nucleotides CSW01_12145: CSW01_12145 - cell division protein FtsA, at 2,597,692 to 2,598,954 _12145 CSW01_12150: CSW01_12150 - cell division protein FtsQ, at 2,598,947 to 2,599,729 _12150 CSW01_12155: CSW01_12155 - UDP-N-acetylmuramate--L-alanine ligase, at 2,599,911 to 2,601,371 _12155 CSW01_12160: CSW01_12160 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,601,385 to 2,602,446 _12160 Position (kb) 2599 2600 2601 2602Strain fitness (log2 ratio) -1 0 1at 2598.982 kb on - strandat 2599.810 kb on - strandat 2599.814 kb on + strandat 2599.827 kb on - strandat 2599.898 kb on + strandat 2599.898 kb on + strandat 2599.898 kb on + strandat 2599.898 kb on + strandat 2599.906 kb on - strandat 2599.906 kb on - strandat 2599.908 kb on + strandat 2599.951 kb on + strandat 2599.951 kb on + strandat 2599.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,598,982 - +0.1
2,599,810 - -0.1
2,599,814 + -0.6
2,599,827 - -0.3
2,599,898 + -0.5
2,599,898 + -0.2
2,599,898 + +0.3
2,599,898 + +0.2
2,599,906 - -0.1
2,599,906 - +0.1
2,599,908 + +0.6
2,599,951 + +0.1
2,599,951 + +0.1
2,599,957 - -0.7

Or see this region's nucleotide sequence