Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12140

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12135 and CSW01_12140 are separated by 97 nucleotidesCSW01_12140 and CSW01_12145 are separated by 30 nucleotides CSW01_12135: CSW01_12135 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,595,450 to 2,596,367 _12135 CSW01_12140: CSW01_12140 - cell division protein FtsZ, at 2,596,465 to 2,597,661 _12140 CSW01_12145: CSW01_12145 - cell division protein FtsA, at 2,597,692 to 2,598,954 _12145 Position (kb) 2596 2597 2598Strain fitness (log2 ratio) -3 -2 -1 0 1at 2598.236 kb on - strand, within CSW01_12145at 2598.282 kb on - strand, within CSW01_12145at 2598.347 kb on - strand, within CSW01_12145

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,598,236 - CSW01_12145 0.43 -2.4
2,598,282 - CSW01_12145 0.47 -3.2
2,598,347 - CSW01_12145 0.52 -2.7

Or see this region's nucleotide sequence