Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11650 and CSW01_11655 are separated by 33 nucleotides CSW01_11655 and CSW01_11660 are separated by 7 nucleotides CSW01_11660 and CSW01_11665 overlap by 1 nucleotides CSW01_11665 and CSW01_11670 overlap by 14 nucleotides
CSW01_11650: CSW01_11650 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 2,476,320 to 2,477,546
_11650
CSW01_11655: CSW01_11655 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 2,477,580 to 2,478,176
_11655
CSW01_11660: CSW01_11660 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 2,478,184 to 2,478,816
_11660
CSW01_11665: CSW01_11665 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 2,478,816 to 2,479,589
_11665
CSW01_11670: CSW01_11670 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 2,479,576 to 2,480,823
_11670
Position (kb) 2478
2479 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 2477.824 kb on + strand, within CSW01_11655 at 2477.854 kb on + strand, within CSW01_11655 at 2478.959 kb on - strand, within CSW01_11665 at 2479.090 kb on - strand, within CSW01_11665 at 2479.730 kb on - strand, within CSW01_11670
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,477,824 + CSW01_11655 0.41 -2.7 2,477,854 + CSW01_11655 0.46 -2.8 2,478,959 - CSW01_11665 0.18 -1.2 2,479,090 - CSW01_11665 0.35 -0.5 2,479,730 - CSW01_11670 0.12 +0.1
Or see this region's nucleotide sequence