Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11650

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11645 and CSW01_11650 are separated by 145 nucleotidesCSW01_11650 and CSW01_11655 are separated by 33 nucleotidesCSW01_11655 and CSW01_11660 are separated by 7 nucleotides CSW01_11645: CSW01_11645 - FAD:protein FMN transferase, at 2,475,170 to 2,476,174 _11645 CSW01_11650: CSW01_11650 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 2,476,320 to 2,477,546 _11650 CSW01_11655: CSW01_11655 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 2,477,580 to 2,478,176 _11655 CSW01_11660: CSW01_11660 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 2,478,184 to 2,478,816 _11660 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -3 -2 -1 0 1at 2477.824 kb on + strand, within CSW01_11655at 2477.854 kb on + strand, within CSW01_11655

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,477,824 + CSW01_11655 0.41 -2.7
2,477,854 + CSW01_11655 0.46 -2.8

Or see this region's nucleotide sequence