Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11490

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11480 and CSW01_11485 are separated by 48 nucleotidesCSW01_11485 and CSW01_11490 are separated by 17 nucleotidesCSW01_11490 and CSW01_11495 are separated by 73 nucleotidesCSW01_11495 and CSW01_11500 are separated by 53 nucleotides CSW01_11480: CSW01_11480 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,441,323 to 2,442,531 _11480 CSW01_11485: CSW01_11485 - phosphatidate cytidylyltransferase, at 2,442,580 to 2,443,422 _11485 CSW01_11490: CSW01_11490 - di-trans,poly-cis-decaprenylcistransferase, at 2,443,440 to 2,444,210 _11490 CSW01_11495: CSW01_11495 - ribosome-recycling factor, at 2,444,284 to 2,444,841 _11495 CSW01_11500: CSW01_11500 - UMP kinase, at 2,444,895 to 2,445,626 _11500 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -1 0 1at 2442.551 kb on - strandat 2443.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,442,551 - -1.5
2,443,464 - -0.1

Or see this region's nucleotide sequence