Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11470

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11460 and CSW01_11465 are separated by 9 nucleotidesCSW01_11465 and CSW01_11470 are separated by 14 nucleotidesCSW01_11470 and CSW01_11475 are separated by 48 nucleotides CSW01_11460: CSW01_11460 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,435,919 to 2,436,974 _11460 CSW01_11465: CSW01_11465 - chaperone protein Skp, at 2,436,984 to 2,437,493 _11465 CSW01_11470: CSW01_11470 - outer membrane protein assembly factor BamA, at 2,437,508 to 2,439,919 _11470 CSW01_11475: CSW01_11475 - zinc metalloprotease, at 2,439,968 to 2,441,326 _11475 Position (kb) 2437 2438 2439 2440Strain fitness (log2 ratio) -1 0 1at 2437.515 kb on - strandat 2439.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,437,515 - -0.2
2,439,955 - -0.3

Or see this region's nucleotide sequence