Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11380

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11375 and CSW01_11380 are separated by 8 nucleotidesCSW01_11380 and CSW01_11385 are separated by 56 nucleotidesCSW01_11385 and CSW01_11390 are separated by 70 nucleotides CSW01_11375: CSW01_11375 - TIGR03503 family protein, at 2,418,153 to 2,419,412 _11375 CSW01_11380: CSW01_11380 - DNA polymerase III subunit epsilon, at 2,419,421 to 2,420,164 _11380 CSW01_11385: CSW01_11385 - ribonuclease HI, at 2,420,221 to 2,420,691 _11385 CSW01_11390: CSW01_11390 - class I SAM-dependent methyltransferase, at 2,420,762 to 2,421,499 _11390 Position (kb) 2419 2420 2421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2418.487 kb on + strand, within CSW01_11375at 2418.525 kb on + strand, within CSW01_11375at 2418.564 kb on - strand, within CSW01_11375at 2418.589 kb on + strand, within CSW01_11375at 2418.589 kb on - strand, within CSW01_11375at 2418.614 kb on + strand, within CSW01_11375at 2418.646 kb on + strand, within CSW01_11375at 2418.646 kb on + strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.675 kb on + strand, within CSW01_11375at 2418.715 kb on + strand, within CSW01_11375at 2418.728 kb on + strand, within CSW01_11375at 2418.771 kb on + strand, within CSW01_11375at 2418.791 kb on - strand, within CSW01_11375at 2418.791 kb on - strand, within CSW01_11375at 2418.882 kb on - strand, within CSW01_11375at 2418.892 kb on - strand, within CSW01_11375at 2418.892 kb on - strand, within CSW01_11375at 2418.999 kb on - strand, within CSW01_11375at 2419.081 kb on - strand, within CSW01_11375at 2419.224 kb on - strand, within CSW01_11375at 2419.302 kb on + strandat 2419.307 kb on + strandat 2419.363 kb on - strandat 2419.373 kb on - strandat 2419.454 kb on - strandat 2420.203 kb on + strandat 2420.203 kb on + strandat 2420.696 kb on + strandat 2420.749 kb on + strandat 2420.749 kb on + strandat 2420.757 kb on - strandat 2420.969 kb on + strand, within CSW01_11390at 2421.048 kb on - strand, within CSW01_11390at 2421.051 kb on + strand, within CSW01_11390at 2421.059 kb on - strand, within CSW01_11390at 2421.079 kb on + strand, within CSW01_11390at 2421.112 kb on + strand, within CSW01_11390at 2421.120 kb on - strand, within CSW01_11390at 2421.146 kb on + strand, within CSW01_11390

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,418,487 + CSW01_11375 0.27 +1.5
2,418,525 + CSW01_11375 0.30 -0.1
2,418,564 - CSW01_11375 0.33 +0.8
2,418,589 + CSW01_11375 0.35 +0.0
2,418,589 - CSW01_11375 0.35 +0.5
2,418,614 + CSW01_11375 0.37 -0.7
2,418,646 + CSW01_11375 0.39 +1.2
2,418,646 + CSW01_11375 0.39 -0.1
2,418,654 - CSW01_11375 0.40 -0.3
2,418,654 - CSW01_11375 0.40 +0.3
2,418,654 - CSW01_11375 0.40 -0.1
2,418,654 - CSW01_11375 0.40 +0.6
2,418,675 + CSW01_11375 0.41 +0.0
2,418,715 + CSW01_11375 0.45 +0.3
2,418,728 + CSW01_11375 0.46 -0.2
2,418,771 + CSW01_11375 0.49 -0.2
2,418,791 - CSW01_11375 0.51 +0.2
2,418,791 - CSW01_11375 0.51 +0.4
2,418,882 - CSW01_11375 0.58 +0.2
2,418,892 - CSW01_11375 0.59 -0.2
2,418,892 - CSW01_11375 0.59 -0.2
2,418,999 - CSW01_11375 0.67 +0.3
2,419,081 - CSW01_11375 0.74 -0.1
2,419,224 - CSW01_11375 0.85 -0.2
2,419,302 + +0.3
2,419,307 + +0.8
2,419,363 - +0.1
2,419,373 - +0.2
2,419,454 - -4.4
2,420,203 + -1.2
2,420,203 + -0.9
2,420,696 + +0.3
2,420,749 + -0.8
2,420,749 + +0.9
2,420,757 - -0.1
2,420,969 + CSW01_11390 0.28 -0.2
2,421,048 - CSW01_11390 0.39 -0.2
2,421,051 + CSW01_11390 0.39 -0.3
2,421,059 - CSW01_11390 0.40 -0.2
2,421,079 + CSW01_11390 0.43 +0.9
2,421,112 + CSW01_11390 0.47 +0.2
2,421,120 - CSW01_11390 0.49 -0.2
2,421,146 + CSW01_11390 0.52 +0.0

Or see this region's nucleotide sequence