Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_10890 and CSW01_10895 are separated by 41 nucleotides CSW01_10895 and CSW01_10900 are separated by 26 nucleotides CSW01_10900 and CSW01_10905 are separated by 41 nucleotides CSW01_10905 and CSW01_10910 are separated by 25 nucleotides CSW01_10910 and CSW01_10915 are separated by 22 nucleotides CSW01_10915 and CSW01_10920 are separated by 17 nucleotides CSW01_10920 and CSW01_10925 are separated by 43 nucleotides CSW01_10925 and CSW01_10930 are separated by 38 nucleotides CSW01_10930 and CSW01_10935 are separated by 41 nucleotides CSW01_10935 and CSW01_10940 are separated by 283 nucleotides
CSW01_10890: CSW01_10890 - tRNA-Gln, at 2,329,873 to 2,329,947
_10890
CSW01_10895: CSW01_10895 - tRNA-Leu, at 2,329,989 to 2,330,073
_10895
CSW01_10900: CSW01_10900 - tRNA-Gln, at 2,330,100 to 2,330,174
_10900
CSW01_10905: CSW01_10905 - tRNA-Leu, at 2,330,216 to 2,330,300
_10905
CSW01_10910: CSW01_10910 - tRNA-Met, at 2,330,326 to 2,330,402
_10910
CSW01_10915: CSW01_10915 - tRNA-Leu, at 2,330,425 to 2,330,510
_10915
CSW01_10920: CSW01_10920 - tRNA-Gln, at 2,330,528 to 2,330,602
_10920
CSW01_10925: CSW01_10925 - tRNA-Leu, at 2,330,646 to 2,330,730
_10925
CSW01_10930: CSW01_10930 - tRNA-Gln, at 2,330,769 to 2,330,843
_10930
CSW01_10935: CSW01_10935 - tRNA-Leu, at 2,330,885 to 2,330,969
_10935
CSW01_10940: CSW01_10940 - flagellin C, at 2,331,253 to 2,332,386
_10940
Position (kb)
2330
2331 Strain fitness (log2 ratio)
-2
-1
0
1 at 2330.728 kb on + strand at 2330.730 kb on + strand at 2330.736 kb on - strand at 2330.736 kb on - strand at 2331.254 kb on - strand at 2331.270 kb on + strand at 2331.273 kb on - strand at 2331.520 kb on + strand, within CSW01_10940 at 2331.520 kb on + strand, within CSW01_10940 at 2331.522 kb on + strand, within CSW01_10940 at 2331.530 kb on - strand, within CSW01_10940 at 2331.554 kb on - strand, within CSW01_10940 at 2331.645 kb on - strand, within CSW01_10940 at 2331.645 kb on - strand, within CSW01_10940 at 2331.794 kb on + strand, within CSW01_10940 at 2331.840 kb on - strand, within CSW01_10940
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,330,728 + +0.3 2,330,730 + -0.0 2,330,736 - -1.1 2,330,736 - -0.4 2,331,254 - -0.2 2,331,270 + -0.4 2,331,273 - +0.1 2,331,520 + CSW01_10940 0.24 -0.2 2,331,520 + CSW01_10940 0.24 +0.2 2,331,522 + CSW01_10940 0.24 -2.0 2,331,530 - CSW01_10940 0.24 -0.3 2,331,554 - CSW01_10940 0.27 +0.4 2,331,645 - CSW01_10940 0.35 -0.5 2,331,645 - CSW01_10940 0.35 +0.2 2,331,794 + CSW01_10940 0.48 +0.1 2,331,840 - CSW01_10940 0.52 -0.9
Or see this region's nucleotide sequence