Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_10855 and CSW01_10860 overlap by 19 nucleotides CSW01_10860 and CSW01_10865 are separated by 30 nucleotides CSW01_10865 and CSW01_10870 are separated by 168 nucleotides CSW01_10870 and CSW01_10875 are separated by 10 nucleotides
CSW01_10855: CSW01_10855 - outer membrane lipoprotein LolB, at 2,325,071 to 2,325,688
_10855
CSW01_10860: CSW01_10860 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 2,325,670 to 2,326,557
_10860
CSW01_10865: CSW01_10865 - ribose-phosphate pyrophosphokinase, at 2,326,588 to 2,327,532
_10865
CSW01_10870: CSW01_10870 - peptidyl-tRNA hydrolase, at 2,327,701 to 2,328,291
_10870
CSW01_10875: CSW01_10875 - redox-regulated ATPase YchF, at 2,328,302 to 2,329,393
_10875
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-1
0
1 at 2326.550 kb on - strand at 2326.571 kb on + strand at 2327.556 kb on + strand at 2327.576 kb on - strand at 2327.697 kb on - strand at 2328.221 kb on + strand, within CSW01_10870 at 2328.239 kb on + strand at 2328.294 kb on - strand at 2328.299 kb on + strand at 2328.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,326,550 - -1.5 2,326,571 + -1.5 2,327,556 + +0.3 2,327,576 - -0.2 2,327,697 - -0.2 2,328,221 + CSW01_10870 0.88 -1.1 2,328,239 + +0.3 2,328,294 - +0.6 2,328,299 + -0.2 2,328,375 - -1.5
Or see this region's nucleotide sequence