Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10865

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10855 and CSW01_10860 overlap by 19 nucleotidesCSW01_10860 and CSW01_10865 are separated by 30 nucleotidesCSW01_10865 and CSW01_10870 are separated by 168 nucleotidesCSW01_10870 and CSW01_10875 are separated by 10 nucleotides CSW01_10855: CSW01_10855 - outer membrane lipoprotein LolB, at 2,325,071 to 2,325,688 _10855 CSW01_10860: CSW01_10860 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 2,325,670 to 2,326,557 _10860 CSW01_10865: CSW01_10865 - ribose-phosphate pyrophosphokinase, at 2,326,588 to 2,327,532 _10865 CSW01_10870: CSW01_10870 - peptidyl-tRNA hydrolase, at 2,327,701 to 2,328,291 _10870 CSW01_10875: CSW01_10875 - redox-regulated ATPase YchF, at 2,328,302 to 2,329,393 _10875 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -1 0 1at 2326.550 kb on - strandat 2326.571 kb on + strandat 2327.556 kb on + strandat 2327.576 kb on - strandat 2327.697 kb on - strandat 2328.221 kb on + strand, within CSW01_10870at 2328.239 kb on + strandat 2328.294 kb on - strandat 2328.299 kb on + strandat 2328.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,326,550 - -1.5
2,326,571 + -1.5
2,327,556 + +0.3
2,327,576 - -0.2
2,327,697 - -0.2
2,328,221 + CSW01_10870 0.88 -1.1
2,328,239 + +0.3
2,328,294 - +0.6
2,328,299 + -0.2
2,328,375 - -1.5

Or see this region's nucleotide sequence