Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10860

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_10850 and CSW01_10855 are separated by 158 nucleotidesCSW01_10855 and CSW01_10860 overlap by 19 nucleotidesCSW01_10860 and CSW01_10865 are separated by 30 nucleotides CSW01_10850: CSW01_10850 - glutamyl-tRNA reductase, at 2,323,653 to 2,324,912 _10850 CSW01_10855: CSW01_10855 - outer membrane lipoprotein LolB, at 2,325,071 to 2,325,688 _10855 CSW01_10860: CSW01_10860 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 2,325,670 to 2,326,557 _10860 CSW01_10865: CSW01_10865 - ribose-phosphate pyrophosphokinase, at 2,326,588 to 2,327,532 _10865 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -1 0 1at 2325.032 kb on - strandat 2326.550 kb on - strandat 2326.571 kb on + strandat 2327.556 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
2,325,032 - -0.9
2,326,550 - -1.5
2,326,571 + -1.5
2,327,556 + +0.3

Or see this region's nucleotide sequence