Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10845

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10835 and CSW01_10840 overlap by 1 nucleotidesCSW01_10840 and CSW01_10845 are separated by 3 nucleotidesCSW01_10845 and CSW01_10850 are separated by 29 nucleotides CSW01_10835: CSW01_10835 - hypothetical protein, at 2,321,288 to 2,321,671 _10835 CSW01_10840: CSW01_10840 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 2,321,671 to 2,322,531 _10840 CSW01_10845: CSW01_10845 - peptide chain release factor 1, at 2,322,535 to 2,323,623 _10845 CSW01_10850: CSW01_10850 - glutamyl-tRNA reductase, at 2,323,653 to 2,324,912 _10850 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -1 0 1at 2321.567 kb on + strand, within CSW01_10835at 2321.567 kb on + strand, within CSW01_10835at 2321.575 kb on - strand, within CSW01_10835at 2321.575 kb on - strand, within CSW01_10835at 2321.575 kb on - strand, within CSW01_10835at 2321.591 kb on + strand, within CSW01_10835at 2321.642 kb on - strandat 2322.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,321,567 + CSW01_10835 0.73 -0.4
2,321,567 + CSW01_10835 0.73 -0.3
2,321,575 - CSW01_10835 0.75 -0.6
2,321,575 - CSW01_10835 0.75 -0.5
2,321,575 - CSW01_10835 0.75 -0.5
2,321,591 + CSW01_10835 0.79 -1.1
2,321,642 - -0.3
2,322,602 - -0.4

Or see this region's nucleotide sequence