Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10435

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_10430 and CSW01_10435 are separated by 88 nucleotidesCSW01_10435 and CSW01_10440 are separated by 14 nucleotides CSW01_10430: CSW01_10430 - 2-oxoglutarate dehydrogenase subunit E1, at 2,245,416 to 2,248,226 _10430 CSW01_10435: CSW01_10435 - succinate dehydrogenase iron-sulfur subunit, at 2,248,315 to 2,249,025 _10435 CSW01_10440: CSW01_10440 - succinate dehydrogenase flavoprotein subunit, at 2,249,040 to 2,250,806 _10440 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -1 0 1at 2247.901 kb on - strand, within CSW01_10430at 2248.288 kb on - strandat 2248.461 kb on - strand, within CSW01_10435at 2248.646 kb on - strand, within CSW01_10435at 2248.878 kb on - strand, within CSW01_10435at 2249.074 kb on + strandat 2249.341 kb on + strand, within CSW01_10440at 2249.438 kb on - strand, within CSW01_10440at 2249.553 kb on + strand, within CSW01_10440at 2249.661 kb on + strand, within CSW01_10440at 2249.723 kb on - strand, within CSW01_10440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
2,247,901 - CSW01_10430 0.88 +0.1
2,248,288 - +0.5
2,248,461 - CSW01_10435 0.21 -1.7
2,248,646 - CSW01_10435 0.47 -1.1
2,248,878 - CSW01_10435 0.79 +1.1
2,249,074 + -0.2
2,249,341 + CSW01_10440 0.17 +0.3
2,249,438 - CSW01_10440 0.23 -1.7
2,249,553 + CSW01_10440 0.29 -1.1
2,249,661 + CSW01_10440 0.35 +0.3
2,249,723 - CSW01_10440 0.39 +1.6

Or see this region's nucleotide sequence