Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_10105 and CSW01_10110 are separated by 5 nucleotides CSW01_10110 and CSW01_10115 are separated by 9 nucleotides CSW01_10115 and CSW01_10120 are separated by 34 nucleotides CSW01_10120 and CSW01_10125 are separated by 147 nucleotides
CSW01_10105: CSW01_10105 - 3-oxoacyl-ACP synthase III, at 2,175,100 to 2,176,050
_10105
CSW01_10110: CSW01_10110 - phosphate acyltransferase, at 2,176,056 to 2,177,081
_10110
CSW01_10115: CSW01_10115 - 50S ribosomal protein L32, at 2,177,091 to 2,177,261
_10115
CSW01_10120: CSW01_10120 - 23S rRNA accumulation protein YceD, at 2,177,296 to 2,177,820
_10120
CSW01_10125: CSW01_10125 - maf-like protein, at 2,177,968 to 2,178,549
_10125
Position (kb) 2176
2177
2178 Strain fitness (log2 ratio) -1
0
1 at 2175.098 kb on + strand at 2176.510 kb on + strand, within CSW01_10110 at 2177.723 kb on - strand, within CSW01_10120 at 2177.905 kb on + strand at 2177.913 kb on - strand at 2177.915 kb on + strand at 2177.923 kb on - strand at 2177.927 kb on + strand at 2177.935 kb on - strand at 2177.948 kb on + strand at 2178.037 kb on - strand, within CSW01_10125 at 2178.048 kb on - strand, within CSW01_10125
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,175,098 + -0.9 2,176,510 + CSW01_10110 0.44 -1.6 2,177,723 - CSW01_10120 0.81 -0.5 2,177,905 + +0.0 2,177,913 - -0.6 2,177,915 + +0.9 2,177,923 - -0.2 2,177,927 + -0.5 2,177,935 - -0.9 2,177,948 + +0.1 2,178,037 - CSW01_10125 0.12 -0.4 2,178,048 - CSW01_10125 0.14 -0.6
Or see this region's nucleotide sequence