Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09605 and CSW01_09610 are separated by 122 nucleotides CSW01_09610 and CSW01_09615 are separated by 79 nucleotides CSW01_09615 and CSW01_09620 are separated by 105 nucleotides
CSW01_09605: CSW01_09605 - endopeptidase La, at 2,068,130 to 2,070,490
_09605
CSW01_09610: CSW01_09610 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,070,613 to 2,071,893
_09610
CSW01_09615: CSW01_09615 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 2,071,973 to 2,072,599
_09615
CSW01_09620: CSW01_09620 - trigger factor, at 2,072,705 to 2,074,006
_09620
Position (kb)
2070
2071
2072 Strain fitness (log2 ratio)
-1
0
1
2 at 2069.716 kb on - strand, within CSW01_09605 at 2069.928 kb on + strand, within CSW01_09605 at 2069.936 kb on - strand, within CSW01_09605 at 2070.041 kb on - strand, within CSW01_09605 at 2070.203 kb on + strand, within CSW01_09605 at 2070.211 kb on - strand, within CSW01_09605 at 2070.453 kb on - strand at 2070.525 kb on + strand at 2070.533 kb on - strand at 2070.533 kb on - strand at 2070.533 kb on - strand at 2070.533 kb on - strand at 2070.533 kb on - strand at 2070.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,069,716 - CSW01_09605 0.67 -1.0 2,069,928 + CSW01_09605 0.76 +1.8 2,069,936 - CSW01_09605 0.76 -0.2 2,070,041 - CSW01_09605 0.81 -0.0 2,070,203 + CSW01_09605 0.88 +0.5 2,070,211 - CSW01_09605 0.88 -0.3 2,070,453 - -0.3 2,070,525 + -0.2 2,070,533 - +0.1 2,070,533 - +0.0 2,070,533 - +0.9 2,070,533 - +0.4 2,070,533 - +0.0 2,070,575 + +0.1
Or see this region's nucleotide sequence