Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09610

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09605 and CSW01_09610 are separated by 122 nucleotidesCSW01_09610 and CSW01_09615 are separated by 79 nucleotidesCSW01_09615 and CSW01_09620 are separated by 105 nucleotides CSW01_09605: CSW01_09605 - endopeptidase La, at 2,068,130 to 2,070,490 _09605 CSW01_09610: CSW01_09610 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,070,613 to 2,071,893 _09610 CSW01_09615: CSW01_09615 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 2,071,973 to 2,072,599 _09615 CSW01_09620: CSW01_09620 - trigger factor, at 2,072,705 to 2,074,006 _09620 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -1 0 1 2at 2069.716 kb on - strand, within CSW01_09605at 2069.928 kb on + strand, within CSW01_09605at 2069.936 kb on - strand, within CSW01_09605at 2070.041 kb on - strand, within CSW01_09605at 2070.203 kb on + strand, within CSW01_09605at 2070.211 kb on - strand, within CSW01_09605at 2070.453 kb on - strandat 2070.525 kb on + strandat 2070.533 kb on - strandat 2070.533 kb on - strandat 2070.533 kb on - strandat 2070.533 kb on - strandat 2070.533 kb on - strandat 2070.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,069,716 - CSW01_09605 0.67 -1.0
2,069,928 + CSW01_09605 0.76 +1.8
2,069,936 - CSW01_09605 0.76 -0.2
2,070,041 - CSW01_09605 0.81 -0.0
2,070,203 + CSW01_09605 0.88 +0.5
2,070,211 - CSW01_09605 0.88 -0.3
2,070,453 - -0.3
2,070,525 + -0.2
2,070,533 - +0.1
2,070,533 - +0.0
2,070,533 - +0.9
2,070,533 - +0.4
2,070,533 - +0.0
2,070,575 + +0.1

Or see this region's nucleotide sequence