Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09425

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09415 and CSW01_09420 overlap by 7 nucleotidesCSW01_09420 and CSW01_09425 are separated by 114 nucleotidesCSW01_09425 and CSW01_09430 are separated by 0 nucleotidesCSW01_09430 and CSW01_09435 overlap by 8 nucleotides CSW01_09415: CSW01_09415 - DNA internalization-related competence protein ComEC/Rec2, at 2,022,423 to 2,024,681 _09415 CSW01_09420: CSW01_09420 - DUF2062 domain-containing protein, at 2,024,675 to 2,025,205 _09420 CSW01_09425: CSW01_09425 - lipoprotein-releasing system transmembrane subunit LolE, at 2,025,320 to 2,026,564 _09425 CSW01_09430: CSW01_09430 - lipoprotein-releasing system ATP-binding protein LolD, at 2,026,565 to 2,027,251 _09430 CSW01_09435: CSW01_09435 - lipoprotein-releasing system transmembrane subunit LolC, at 2,027,244 to 2,028,464 _09435 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -1 0 1at 2024.333 kb on - strand, within CSW01_09415at 2024.434 kb on + strand, within CSW01_09415at 2024.467 kb on + strandat 2024.575 kb on - strandat 2024.604 kb on - strandat 2024.706 kb on - strandat 2024.756 kb on + strand, within CSW01_09420at 2025.054 kb on + strand, within CSW01_09420at 2025.144 kb on + strand, within CSW01_09420at 2025.152 kb on - strand, within CSW01_09420at 2026.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,024,333 - CSW01_09415 0.85 -0.3
2,024,434 + CSW01_09415 0.89 +0.1
2,024,467 + -0.2
2,024,575 - -1.0
2,024,604 - +0.1
2,024,706 - +0.4
2,024,756 + CSW01_09420 0.15 -0.1
2,025,054 + CSW01_09420 0.71 -0.9
2,025,144 + CSW01_09420 0.88 -0.2
2,025,152 - CSW01_09420 0.90 -0.5
2,026,604 - -1.0

Or see this region's nucleotide sequence