Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09415 and CSW01_09420 overlap by 7 nucleotides CSW01_09420 and CSW01_09425 are separated by 114 nucleotides CSW01_09425 and CSW01_09430 are separated by 0 nucleotides CSW01_09430 and CSW01_09435 overlap by 8 nucleotides
CSW01_09415: CSW01_09415 - DNA internalization-related competence protein ComEC/Rec2, at 2,022,423 to 2,024,681
_09415
CSW01_09420: CSW01_09420 - DUF2062 domain-containing protein, at 2,024,675 to 2,025,205
_09420
CSW01_09425: CSW01_09425 - lipoprotein-releasing system transmembrane subunit LolE, at 2,025,320 to 2,026,564
_09425
CSW01_09430: CSW01_09430 - lipoprotein-releasing system ATP-binding protein LolD, at 2,026,565 to 2,027,251
_09430
CSW01_09435: CSW01_09435 - lipoprotein-releasing system transmembrane subunit LolC, at 2,027,244 to 2,028,464
_09435
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-1
0
1 at 2024.333 kb on - strand, within CSW01_09415 at 2024.434 kb on + strand, within CSW01_09415 at 2024.467 kb on + strand at 2024.575 kb on - strand at 2024.604 kb on - strand at 2024.706 kb on - strand at 2024.756 kb on + strand, within CSW01_09420 at 2025.054 kb on + strand, within CSW01_09420 at 2025.144 kb on + strand, within CSW01_09420 at 2025.152 kb on - strand, within CSW01_09420 at 2026.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,024,333 - CSW01_09415 0.85 -0.3 2,024,434 + CSW01_09415 0.89 +0.1 2,024,467 + -0.2 2,024,575 - -1.0 2,024,604 - +0.1 2,024,706 - +0.4 2,024,756 + CSW01_09420 0.15 -0.1 2,025,054 + CSW01_09420 0.71 -0.9 2,025,144 + CSW01_09420 0.88 -0.2 2,025,152 - CSW01_09420 0.90 -0.5 2,026,604 - -1.0
Or see this region's nucleotide sequence