Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09400

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09390 and CSW01_09395 are separated by 84 nucleotidesCSW01_09395 and CSW01_09400 overlap by 1 nucleotidesCSW01_09400 and CSW01_09405 overlap by 20 nucleotidesCSW01_09405 and CSW01_09410 overlap by 1 nucleotides CSW01_09390: CSW01_09390 - SpoVR family protein, at 2,017,081 to 2,018,631 _09390 CSW01_09395: CSW01_09395 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,018,716 to 2,019,474 _09395 CSW01_09400: CSW01_09400 - hypothetical protein, at 2,019,474 to 2,019,653 _09400 CSW01_09405: CSW01_09405 - tetraacyldisaccharide 4'-kinase, at 2,019,634 to 2,020,644 _09405 CSW01_09410: CSW01_09410 - lipid A export ATP-binding/permease MsbA, at 2,020,644 to 2,022,392 _09410 Position (kb) 2019 2020Strain fitness (log2 ratio) -1 0 1at 2018.477 kb on + strandat 2018.633 kb on - strandat 2018.655 kb on + strandat 2018.716 kb on + strandat 2019.552 kb on - strand, within CSW01_09400at 2019.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,018,477 + +0.6
2,018,633 - -1.5
2,018,655 + +0.1
2,018,716 + +0.7
2,019,552 - CSW01_09400 0.43 -0.1
2,019,655 - -0.2

Or see this region's nucleotide sequence