Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_08715 and CSW01_08720 are separated by 3 nucleotides CSW01_08720 and CSW01_08725 are separated by 83 nucleotides CSW01_08725 and CSW01_08730 are separated by 35 nucleotides CSW01_08730 and CSW01_08735 are separated by 103 nucleotides
CSW01_08715: CSW01_08715 - leucyl/phenylalanyl-tRNA--protein transferase, at 1,870,834 to 1,871,565
_08715
CSW01_08720: CSW01_08720 - arginyltransferase, at 1,871,569 to 1,872,270
_08720
CSW01_08725: CSW01_08725 - translation initiation factor IF-1, at 1,872,354 to 1,872,572
_08725
CSW01_08730: CSW01_08730 - phage-shock protein, at 1,872,608 to 1,872,772
_08730
CSW01_08735: CSW01_08735 - enoyl-[acyl-carrier-protein] reductase FabV, at 1,872,876 to 1,874,081
_08735
Position (kb) 1872
1873 Strain fitness (log2 ratio) -2
-1
0
1 at 1871.443 kb on + strand, within CSW01_08715 at 1871.443 kb on + strand, within CSW01_08715 at 1871.446 kb on - strand, within CSW01_08715 at 1871.451 kb on - strand, within CSW01_08715 at 1871.451 kb on - strand, within CSW01_08715 at 1871.451 kb on - strand, within CSW01_08715 at 1871.480 kb on + strand, within CSW01_08715 at 1871.488 kb on - strand, within CSW01_08715 at 1871.518 kb on - strand at 1871.559 kb on + strand at 1871.560 kb on - strand at 1871.691 kb on - strand, within CSW01_08720 at 1872.055 kb on + strand, within CSW01_08720 at 1872.213 kb on - strand at 1872.213 kb on - strand at 1872.265 kb on + strand at 1872.676 kb on + strand, within CSW01_08730 at 1872.700 kb on + strand, within CSW01_08730 at 1872.708 kb on - strand, within CSW01_08730 at 1872.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,871,443 + CSW01_08715 0.83 -0.1 1,871,443 + CSW01_08715 0.83 -2.5 1,871,446 - CSW01_08715 0.84 -1.4 1,871,451 - CSW01_08715 0.84 +0.6 1,871,451 - CSW01_08715 0.84 +0.1 1,871,451 - CSW01_08715 0.84 +0.4 1,871,480 + CSW01_08715 0.88 -0.3 1,871,488 - CSW01_08715 0.89 -0.7 1,871,518 - -0.0 1,871,559 + -0.3 1,871,560 - +0.4 1,871,691 - CSW01_08720 0.17 -0.1 1,872,055 + CSW01_08720 0.69 +0.1 1,872,213 - -1.5 1,872,213 - +0.7 1,872,265 + -0.5 1,872,676 + CSW01_08730 0.41 -0.4 1,872,700 + CSW01_08730 0.56 -0.4 1,872,708 - CSW01_08730 0.61 -0.4 1,872,814 - -0.4
Or see this region's nucleotide sequence