Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07565

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07555 and CSW01_07560 overlap by 8 nucleotidesCSW01_07560 and CSW01_07565 are separated by 275 nucleotidesCSW01_07565 and CSW01_07570 are separated by 11 nucleotidesCSW01_07570 and CSW01_07575 are separated by 134 nucleotides CSW01_07555: CSW01_07555 - hypothetical protein, at 1,616,961 to 1,618,310 _07555 CSW01_07560: CSW01_07560 - DUF4442 domain-containing protein, at 1,618,303 to 1,618,779 _07560 CSW01_07565: CSW01_07565 - 3-deoxy-7-phosphoheptulonate synthase, at 1,619,055 to 1,620,116 _07565 CSW01_07570: CSW01_07570 - nucleotide-binding protein, at 1,620,128 to 1,620,610 _07570 CSW01_07575: CSW01_07575 - NAD-dependent protein deacylase, at 1,620,745 to 1,621,524 _07575 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -2 -1 0 1 2at 1618.223 kb on + strandat 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.383 kb on - strand, within CSW01_07560at 1618.392 kb on + strand, within CSW01_07560at 1618.392 kb on - strand, within CSW01_07560at 1618.424 kb on + strand, within CSW01_07560at 1618.548 kb on + strand, within CSW01_07560at 1618.558 kb on + strand, within CSW01_07560at 1618.660 kb on - strand, within CSW01_07560at 1618.670 kb on - strand, within CSW01_07560at 1618.719 kb on - strand, within CSW01_07560at 1618.740 kb on + strandat 1618.740 kb on + strandat 1618.745 kb on + strandat 1618.748 kb on - strandat 1618.748 kb on - strandat 1618.748 kb on - strandat 1618.768 kb on + strandat 1618.776 kb on - strandat 1619.020 kb on + strandat 1619.115 kb on + strandat 1619.138 kb on - strandat 1619.272 kb on - strand, within CSW01_07565at 1619.370 kb on + strand, within CSW01_07565at 1619.378 kb on - strand, within CSW01_07565at 1619.453 kb on + strand, within CSW01_07565at 1619.502 kb on + strand, within CSW01_07565at 1619.502 kb on + strand, within CSW01_07565at 1619.502 kb on + strand, within CSW01_07565at 1619.510 kb on - strand, within CSW01_07565at 1619.510 kb on - strand, within CSW01_07565at 1619.510 kb on - strand, within CSW01_07565at 1619.520 kb on - strand, within CSW01_07565at 1619.536 kb on + strand, within CSW01_07565at 1619.559 kb on - strand, within CSW01_07565at 1619.559 kb on - strand, within CSW01_07565at 1619.559 kb on - strand, within CSW01_07565at 1619.591 kb on + strand, within CSW01_07565at 1619.599 kb on - strand, within CSW01_07565at 1619.691 kb on + strand, within CSW01_07565at 1619.733 kb on - strand, within CSW01_07565at 1619.890 kb on - strand, within CSW01_07565at 1619.916 kb on - strand, within CSW01_07565at 1620.123 kb on + strandat 1620.172 kb on + strandat 1620.180 kb on - strand, within CSW01_07570at 1620.420 kb on + strand, within CSW01_07570at 1620.420 kb on + strand, within CSW01_07570at 1620.426 kb on - strand, within CSW01_07570at 1620.618 kb on - strandat 1620.777 kb on - strandat 1620.817 kb on + strandat 1620.852 kb on + strand, within CSW01_07575at 1620.876 kb on + strand, within CSW01_07575at 1620.929 kb on + strand, within CSW01_07575at 1620.929 kb on + strand, within CSW01_07575at 1620.937 kb on - strand, within CSW01_07575at 1621.006 kb on - strand, within CSW01_07575

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,618,223 + -1.0
1,618,365 + CSW01_07560 0.13 -0.3
1,618,365 + CSW01_07560 0.13 +0.3
1,618,365 + CSW01_07560 0.13 +0.4
1,618,365 + CSW01_07560 0.13 +1.3
1,618,365 + CSW01_07560 0.13 +0.2
1,618,365 + CSW01_07560 0.13 +0.4
1,618,365 + CSW01_07560 0.13 +0.8
1,618,365 + CSW01_07560 0.13 +0.6
1,618,365 + CSW01_07560 0.13 +0.6
1,618,365 + CSW01_07560 0.13 -0.1
1,618,373 - CSW01_07560 0.15 +0.5
1,618,373 - CSW01_07560 0.15 -0.7
1,618,373 - CSW01_07560 0.15 -0.4
1,618,373 - CSW01_07560 0.15 -0.7
1,618,373 - CSW01_07560 0.15 +0.3
1,618,373 - CSW01_07560 0.15 -0.1
1,618,373 - CSW01_07560 0.15 +1.7
1,618,373 - CSW01_07560 0.15 -0.5
1,618,373 - CSW01_07560 0.15 +0.3
1,618,373 - CSW01_07560 0.15 +0.4
1,618,373 - CSW01_07560 0.15 -0.0
1,618,373 - CSW01_07560 0.15 -0.2
1,618,373 - CSW01_07560 0.15 -1.0
1,618,383 - CSW01_07560 0.17 +0.7
1,618,392 + CSW01_07560 0.19 -0.3
1,618,392 - CSW01_07560 0.19 +0.3
1,618,424 + CSW01_07560 0.25 +0.1
1,618,548 + CSW01_07560 0.51 +0.5
1,618,558 + CSW01_07560 0.53 -0.0
1,618,660 - CSW01_07560 0.75 +1.1
1,618,670 - CSW01_07560 0.77 -0.1
1,618,719 - CSW01_07560 0.87 +2.3
1,618,740 + +0.4
1,618,740 + +0.2
1,618,745 + +0.2
1,618,748 - +0.5
1,618,748 - +0.1
1,618,748 - -0.4
1,618,768 + -0.3
1,618,776 - -0.8
1,619,020 + -0.4
1,619,115 + -1.0
1,619,138 - -1.3
1,619,272 - CSW01_07565 0.20 -0.1
1,619,370 + CSW01_07565 0.30 -0.4
1,619,378 - CSW01_07565 0.30 -1.1
1,619,453 + CSW01_07565 0.37 -0.3
1,619,502 + CSW01_07565 0.42 -1.0
1,619,502 + CSW01_07565 0.42 -1.8
1,619,502 + CSW01_07565 0.42 -0.0
1,619,510 - CSW01_07565 0.43 -1.7
1,619,510 - CSW01_07565 0.43 -0.9
1,619,510 - CSW01_07565 0.43 -0.3
1,619,520 - CSW01_07565 0.44 -0.7
1,619,536 + CSW01_07565 0.45 -0.3
1,619,559 - CSW01_07565 0.47 +0.8
1,619,559 - CSW01_07565 0.47 -0.8
1,619,559 - CSW01_07565 0.47 -0.6
1,619,591 + CSW01_07565 0.50 +1.3
1,619,599 - CSW01_07565 0.51 +0.3
1,619,691 + CSW01_07565 0.60 -0.6
1,619,733 - CSW01_07565 0.64 -0.9
1,619,890 - CSW01_07565 0.79 -1.5
1,619,916 - CSW01_07565 0.81 -0.2
1,620,123 + -2.3
1,620,172 + -0.6
1,620,180 - CSW01_07570 0.11 +0.2
1,620,420 + CSW01_07570 0.60 +0.1
1,620,420 + CSW01_07570 0.60 +0.4
1,620,426 - CSW01_07570 0.62 -0.1
1,620,618 - +0.4
1,620,777 - -1.6
1,620,817 + -0.3
1,620,852 + CSW01_07575 0.14 +1.0
1,620,876 + CSW01_07575 0.17 +1.4
1,620,929 + CSW01_07575 0.24 +0.3
1,620,929 + CSW01_07575 0.24 -0.7
1,620,937 - CSW01_07575 0.25 +0.1
1,621,006 - CSW01_07575 0.33 +0.5

Or see this region's nucleotide sequence