Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07460

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07450 and CSW01_07455 are separated by 64 nucleotidesCSW01_07455 and CSW01_07460 are separated by 82 nucleotidesCSW01_07460 and CSW01_07465 are separated by 166 nucleotides CSW01_07450: CSW01_07450 - Lon protease family protein, at 1,585,316 to 1,587,112 _07450 CSW01_07455: CSW01_07455 - beta-hydroxydecanoyl-ACP dehydratase, at 1,587,177 to 1,587,695 _07455 CSW01_07460: CSW01_07460 - ribosome modulation factor, at 1,587,778 to 1,587,951 _07460 CSW01_07465: CSW01_07465 - DUF3466 domain-containing protein, at 1,588,118 to 1,589,812 _07465 Position (kb) 1587 1588Strain fitness (log2 ratio) -1 0 1at 1586.849 kb on - strand, within CSW01_07450at 1586.876 kb on - strand, within CSW01_07450at 1587.002 kb on + strandat 1587.832 kb on + strand, within CSW01_07460

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,586,849 - CSW01_07450 0.85 -0.4
1,586,876 - CSW01_07450 0.87 -0.5
1,587,002 + -0.8
1,587,832 + CSW01_07460 0.31 -0.4

Or see this region's nucleotide sequence