Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07420

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07415 and CSW01_07420 are separated by 308 nucleotidesCSW01_07420 and CSW01_07425 are separated by 166 nucleotidesCSW01_07425 and CSW01_07430 are separated by 446 nucleotidesCSW01_07430 and CSW01_07435 are separated by 35 nucleotides CSW01_07415: CSW01_07415 - XRE family transcriptional regulator, at 1,581,037 to 1,581,603 _07415 CSW01_07420: CSW01_07420 - IS3 family transposase, at 1,581,912 to 1,583,134 _07420 CSW01_07425: CSW01_07425 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,583,301 to 1,583,465 _07425 CSW01_07430: CSW01_07430 - hypothetical protein, at 1,583,912 to 1,584,007 _07430 CSW01_07435: CSW01_07435 - hypothetical protein, at 1,584,043 to 1,584,402 _07435 Position (kb) 1581 1582 1583 1584Strain fitness (log2 ratio) -1 0 1at 1581.841 kb on + strandat 1581.944 kb on + strandat 1584.012 kb on - strandat 1584.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,581,841 + +0.4
1,581,944 + +0.1
1,584,012 - -1.7
1,584,073 - +0.3

Or see this region's nucleotide sequence