Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07415

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07410 and CSW01_07415 are separated by 161 nucleotidesCSW01_07415 and CSW01_07420 are separated by 308 nucleotides CSW01_07410: CSW01_07410 - replication protein, at 1,579,307 to 1,580,875 _07410 CSW01_07415: CSW01_07415 - XRE family transcriptional regulator, at 1,581,037 to 1,581,603 _07415 CSW01_07420: CSW01_07420 - IS3 family transposase, at 1,581,912 to 1,583,134 _07420 Position (kb) 1581 1582Strain fitness (log2 ratio) -1 0 1at 1581.841 kb on + strandat 1581.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,581,841 + +0.4
1,581,944 + +0.1

Or see this region's nucleotide sequence