Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07385

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07380 and CSW01_07385 are separated by 427 nucleotidesCSW01_07385 and CSW01_07390 are separated by 446 nucleotidesCSW01_07390 and CSW01_07395 overlap by 8 nucleotidesCSW01_07395 and CSW01_07400 are separated by 77 nucleotides CSW01_07380: CSW01_07380 - XRE family transcriptional regulator, at 1,576,186 to 1,576,752 _07380 CSW01_07385: CSW01_07385 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,577,180 to 1,577,344 _07385 CSW01_07390: CSW01_07390 - hypothetical protein, at 1,577,791 to 1,577,958 _07390 CSW01_07395: CSW01_07395 - helicase, at 1,577,951 to 1,578,118 _07395 CSW01_07400: CSW01_07400 - XRE family transcriptional regulator, at 1,578,196 to 1,578,888 _07400 Position (kb) 1577 1578Strain fitness (log2 ratio) -1 0 1at 1577.917 kb on - strand, within CSW01_07390

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,577,917 - CSW01_07390 0.75 +0.5

Or see this region's nucleotide sequence