Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07010

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_06995 and CSW01_07000 are separated by 7 nucleotidesCSW01_07000 and CSW01_07005 overlap by 8 nucleotidesCSW01_07005 and CSW01_07010 overlap by 11 nucleotidesCSW01_07010 and CSW01_07015 overlap by 4 nucleotidesCSW01_07015 and CSW01_07020 overlap by 26 nucleotides CSW01_06995: CSW01_06995 - methyl-accepting chemotaxis protein, at 1,483,942 to 1,485,177 _06995 CSW01_07000: CSW01_07000 - response regulator, at 1,485,185 to 1,485,565 _07000 CSW01_07005: CSW01_07005 - hypothetical protein, at 1,485,558 to 1,485,818 _07005 CSW01_07010: CSW01_07010 - chemotaxis protein CheA, at 1,485,808 to 1,488,093 _07010 CSW01_07015: CSW01_07015 - response regulator, at 1,488,090 to 1,488,464 _07015 CSW01_07020: CSW01_07020 - Chemotaxis protein methyltransferase 2, at 1,488,439 to 1,489,306 _07020 Position (kb) 1485 1486 1487 1488 1489Strain fitness (log2 ratio) -2 -1 0 1at 1484.864 kb on + strand, within CSW01_06995at 1485.078 kb on + strandat 1485.086 kb on - strandat 1485.086 kb on - strandat 1485.101 kb on + strandat 1485.101 kb on + strandat 1485.109 kb on - strandat 1485.111 kb on + strandat 1485.119 kb on - strandat 1485.278 kb on - strand, within CSW01_07000at 1485.302 kb on + strand, within CSW01_07000at 1485.307 kb on + strand, within CSW01_07000at 1485.315 kb on - strand, within CSW01_07000at 1485.373 kb on + strand, within CSW01_07000at 1485.396 kb on + strand, within CSW01_07000at 1485.435 kb on + strand, within CSW01_07000at 1485.450 kb on - strand, within CSW01_07000at 1485.518 kb on + strand, within CSW01_07000at 1485.526 kb on - strand, within CSW01_07000at 1485.526 kb on - strand, within CSW01_07000at 1485.528 kb on + strandat 1485.528 kb on + strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.536 kb on - strandat 1485.641 kb on - strand, within CSW01_07005at 1485.687 kb on - strand, within CSW01_07005at 1485.721 kb on - strand, within CSW01_07005at 1485.831 kb on + strandat 1485.836 kb on + strandat 1485.839 kb on - strandat 1485.874 kb on - strandat 1485.920 kb on + strandat 1486.004 kb on + strandat 1486.071 kb on + strand, within CSW01_07010at 1486.158 kb on + strand, within CSW01_07010at 1486.260 kb on - strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.263 kb on + strand, within CSW01_07010at 1486.271 kb on - strand, within CSW01_07010at 1486.271 kb on - strand, within CSW01_07010at 1486.275 kb on + strand, within CSW01_07010at 1486.275 kb on + strand, within CSW01_07010at 1486.329 kb on - strand, within CSW01_07010at 1486.638 kb on - strand, within CSW01_07010at 1486.638 kb on - strand, within CSW01_07010at 1486.735 kb on + strand, within CSW01_07010at 1486.740 kb on + strand, within CSW01_07010at 1486.743 kb on - strand, within CSW01_07010at 1486.743 kb on - strand, within CSW01_07010at 1486.786 kb on - strand, within CSW01_07010at 1486.789 kb on + strand, within CSW01_07010at 1486.799 kb on + strand, within CSW01_07010at 1486.809 kb on - strand, within CSW01_07010at 1486.826 kb on + strand, within CSW01_07010at 1486.832 kb on - strand, within CSW01_07010at 1486.832 kb on - strand, within CSW01_07010at 1486.869 kb on + strand, within CSW01_07010at 1487.038 kb on + strand, within CSW01_07010at 1487.038 kb on + strand, within CSW01_07010at 1487.040 kb on + strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.046 kb on - strand, within CSW01_07010at 1487.093 kb on - strand, within CSW01_07010at 1487.147 kb on + strand, within CSW01_07010at 1487.212 kb on + strand, within CSW01_07010at 1487.249 kb on + strand, within CSW01_07010at 1487.249 kb on + strand, within CSW01_07010at 1487.249 kb on + strand, within CSW01_07010at 1487.257 kb on - strand, within CSW01_07010at 1487.353 kb on + strand, within CSW01_07010at 1487.353 kb on + strand, within CSW01_07010at 1487.390 kb on - strand, within CSW01_07010at 1487.474 kb on + strand, within CSW01_07010at 1487.474 kb on + strand, within CSW01_07010at 1487.713 kb on + strand, within CSW01_07010at 1487.720 kb on + strand, within CSW01_07010at 1487.753 kb on + strand, within CSW01_07010at 1487.841 kb on + strand, within CSW01_07010at 1488.141 kb on + strand, within CSW01_07015at 1488.182 kb on - strand, within CSW01_07015at 1488.183 kb on + strand, within CSW01_07015at 1488.227 kb on - strand, within CSW01_07015at 1488.227 kb on - strand, within CSW01_07015at 1488.275 kb on + strand, within CSW01_07015at 1488.307 kb on - strand, within CSW01_07015at 1488.345 kb on + strand, within CSW01_07015at 1488.353 kb on - strand, within CSW01_07015at 1488.361 kb on + strand, within CSW01_07015at 1488.369 kb on - strand, within CSW01_07015at 1488.407 kb on - strand, within CSW01_07015at 1488.433 kb on - strandat 1488.433 kb on - strandat 1488.493 kb on - strandat 1488.550 kb on - strand, within CSW01_07020at 1488.563 kb on + strand, within CSW01_07020at 1488.579 kb on + strand, within CSW01_07020at 1488.901 kb on + strand, within CSW01_07020at 1488.901 kb on + strand, within CSW01_07020at 1488.901 kb on + strand, within CSW01_07020at 1488.901 kb on + strand, within CSW01_07020at 1488.909 kb on - strand, within CSW01_07020at 1488.909 kb on - strand, within CSW01_07020at 1488.909 kb on - strand, within CSW01_07020at 1488.975 kb on + strand, within CSW01_07020at 1488.975 kb on + strand, within CSW01_07020at 1488.983 kb on - strand, within CSW01_07020at 1488.999 kb on + strand, within CSW01_07020at 1489.007 kb on - strand, within CSW01_07020at 1489.007 kb on - strand, within CSW01_07020at 1489.041 kb on + strand, within CSW01_07020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
1,484,864 + CSW01_06995 0.75 +0.8
1,485,078 + +0.1
1,485,086 - +0.1
1,485,086 - -0.7
1,485,101 + +0.7
1,485,101 + -0.5
1,485,109 - -0.0
1,485,111 + +0.1
1,485,119 - -0.5
1,485,278 - CSW01_07000 0.24 +0.1
1,485,302 + CSW01_07000 0.31 -0.2
1,485,307 + CSW01_07000 0.32 +0.3
1,485,315 - CSW01_07000 0.34 -0.2
1,485,373 + CSW01_07000 0.49 -0.2
1,485,396 + CSW01_07000 0.55 +0.2
1,485,435 + CSW01_07000 0.66 +0.9
1,485,450 - CSW01_07000 0.70 +1.0
1,485,518 + CSW01_07000 0.87 -0.1
1,485,526 - CSW01_07000 0.90 -0.3
1,485,526 - CSW01_07000 0.90 +0.6
1,485,528 + +1.4
1,485,528 + -0.8
1,485,536 - +0.1
1,485,536 - +0.3
1,485,536 - -0.1
1,485,536 - +0.1
1,485,536 - -1.2
1,485,536 - -0.6
1,485,536 - +0.3
1,485,641 - CSW01_07005 0.32 -0.4
1,485,687 - CSW01_07005 0.49 -0.7
1,485,721 - CSW01_07005 0.62 -0.1
1,485,831 + -0.2
1,485,836 + +0.0
1,485,839 - +0.3
1,485,874 - +0.6
1,485,920 + -1.3
1,486,004 + +0.6
1,486,071 + CSW01_07010 0.12 -0.8
1,486,158 + CSW01_07010 0.15 -0.1
1,486,260 - CSW01_07010 0.20 +1.3
1,486,263 + CSW01_07010 0.20 -0.1
1,486,263 + CSW01_07010 0.20 -0.3
1,486,263 + CSW01_07010 0.20 -0.3
1,486,263 + CSW01_07010 0.20 -1.4
1,486,263 + CSW01_07010 0.20 -2.2
1,486,263 + CSW01_07010 0.20 -0.6
1,486,263 + CSW01_07010 0.20 -0.1
1,486,263 + CSW01_07010 0.20 +0.0
1,486,271 - CSW01_07010 0.20 -0.8
1,486,271 - CSW01_07010 0.20 -1.6
1,486,275 + CSW01_07010 0.20 -0.8
1,486,275 + CSW01_07010 0.20 +0.3
1,486,329 - CSW01_07010 0.23 -0.2
1,486,638 - CSW01_07010 0.36 +0.3
1,486,638 - CSW01_07010 0.36 -0.3
1,486,735 + CSW01_07010 0.41 -0.4
1,486,740 + CSW01_07010 0.41 +0.1
1,486,743 - CSW01_07010 0.41 +0.7
1,486,743 - CSW01_07010 0.41 -1.2
1,486,786 - CSW01_07010 0.43 -0.0
1,486,789 + CSW01_07010 0.43 +0.1
1,486,799 + CSW01_07010 0.43 +0.7
1,486,809 - CSW01_07010 0.44 -0.3
1,486,826 + CSW01_07010 0.45 +1.1
1,486,832 - CSW01_07010 0.45 -0.4
1,486,832 - CSW01_07010 0.45 +0.4
1,486,869 + CSW01_07010 0.46 -1.3
1,487,038 + CSW01_07010 0.54 -0.1
1,487,038 + CSW01_07010 0.54 -0.4
1,487,040 + CSW01_07010 0.54 -0.1
1,487,046 - CSW01_07010 0.54 -0.9
1,487,046 - CSW01_07010 0.54 -0.2
1,487,046 - CSW01_07010 0.54 -0.0
1,487,046 - CSW01_07010 0.54 -0.4
1,487,046 - CSW01_07010 0.54 +0.3
1,487,046 - CSW01_07010 0.54 -0.6
1,487,093 - CSW01_07010 0.56 +0.2
1,487,147 + CSW01_07010 0.59 +0.3
1,487,212 + CSW01_07010 0.61 +0.3
1,487,249 + CSW01_07010 0.63 -0.4
1,487,249 + CSW01_07010 0.63 -0.7
1,487,249 + CSW01_07010 0.63 -0.5
1,487,257 - CSW01_07010 0.63 +0.2
1,487,353 + CSW01_07010 0.68 -0.1
1,487,353 + CSW01_07010 0.68 -0.3
1,487,390 - CSW01_07010 0.69 +0.2
1,487,474 + CSW01_07010 0.73 -0.1
1,487,474 + CSW01_07010 0.73 -0.1
1,487,713 + CSW01_07010 0.83 +0.2
1,487,720 + CSW01_07010 0.84 +0.2
1,487,753 + CSW01_07010 0.85 +0.1
1,487,841 + CSW01_07010 0.89 -0.3
1,488,141 + CSW01_07015 0.14 +0.2
1,488,182 - CSW01_07015 0.25 -0.4
1,488,183 + CSW01_07015 0.25 +0.6
1,488,227 - CSW01_07015 0.37 +0.3
1,488,227 - CSW01_07015 0.37 +0.5
1,488,275 + CSW01_07015 0.49 +0.9
1,488,307 - CSW01_07015 0.58 +0.1
1,488,345 + CSW01_07015 0.68 -0.3
1,488,353 - CSW01_07015 0.70 -0.7
1,488,361 + CSW01_07015 0.72 +0.7
1,488,369 - CSW01_07015 0.74 -0.5
1,488,407 - CSW01_07015 0.85 +0.3
1,488,433 - +0.4
1,488,433 - +0.2
1,488,493 - +0.0
1,488,550 - CSW01_07020 0.13 -0.6
1,488,563 + CSW01_07020 0.14 +0.2
1,488,579 + CSW01_07020 0.16 -0.7
1,488,901 + CSW01_07020 0.53 +0.1
1,488,901 + CSW01_07020 0.53 -0.0
1,488,901 + CSW01_07020 0.53 +0.5
1,488,901 + CSW01_07020 0.53 +0.8
1,488,909 - CSW01_07020 0.54 -0.2
1,488,909 - CSW01_07020 0.54 +0.8
1,488,909 - CSW01_07020 0.54 +0.1
1,488,975 + CSW01_07020 0.62 +0.1
1,488,975 + CSW01_07020 0.62 -0.7
1,488,983 - CSW01_07020 0.63 -0.2
1,488,999 + CSW01_07020 0.65 +0.4
1,489,007 - CSW01_07020 0.65 +0.5
1,489,007 - CSW01_07020 0.65 +1.3
1,489,041 + CSW01_07020 0.69 +0.3

Or see this region's nucleotide sequence