Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06340

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06320 and CSW01_06325 are separated by 172 nucleotidesCSW01_06325 and CSW01_06330 overlap by 76 nucleotidesCSW01_06330 and CSW01_06335 overlap by 4 nucleotidesCSW01_06335 and CSW01_06340 overlap by 1 nucleotidesCSW01_06340 and CSW01_06345 are separated by 95 nucleotides CSW01_06320: CSW01_06320 - competence/damage-inducible protein A, at 1,321,670 to 1,322,917 _06320 CSW01_06325: CSW01_06325 - hypothetical protein, at 1,323,090 to 1,323,518 _06325 CSW01_06330: CSW01_06330 - hypothetical protein, at 1,323,443 to 1,323,622 _06330 CSW01_06335: CSW01_06335 - (2Fe-2S)-binding protein, at 1,323,619 to 1,323,897 _06335 CSW01_06340: CSW01_06340 - ribonucleotide-diphosphate reductase subunit beta, at 1,323,897 to 1,325,030 _06340 CSW01_06345: CSW01_06345 - ribonucleoside-diphosphate reductase subunit alpha, at 1,325,126 to 1,327,411 _06345 Position (kb) 1323 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1at 1323.002 kb on + strandat 1323.176 kb on - strand, within CSW01_06325at 1323.286 kb on - strand, within CSW01_06325at 1323.378 kb on - strand, within CSW01_06325at 1323.422 kb on + strand, within CSW01_06325at 1323.526 kb on + strand, within CSW01_06330at 1323.534 kb on - strand, within CSW01_06330at 1323.616 kb on + strandat 1323.647 kb on - strand, within CSW01_06335at 1323.721 kb on - strand, within CSW01_06335at 1323.721 kb on - strand, within CSW01_06335at 1323.773 kb on + strand, within CSW01_06335at 1323.781 kb on - strand, within CSW01_06335at 1323.796 kb on + strand, within CSW01_06335at 1323.801 kb on + strand, within CSW01_06335at 1323.804 kb on - strand, within CSW01_06335at 1323.804 kb on - strand, within CSW01_06335at 1323.814 kb on - strand, within CSW01_06335at 1323.847 kb on + strand, within CSW01_06335at 1323.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,323,002 + -0.8
1,323,176 - CSW01_06325 0.20 -0.1
1,323,286 - CSW01_06325 0.46 +1.6
1,323,378 - CSW01_06325 0.67 -0.3
1,323,422 + CSW01_06325 0.77 -0.3
1,323,526 + CSW01_06330 0.46 +0.9
1,323,534 - CSW01_06330 0.51 -0.6
1,323,616 + +0.5
1,323,647 - CSW01_06335 0.10 +0.4
1,323,721 - CSW01_06335 0.37 +1.0
1,323,721 - CSW01_06335 0.37 -0.8
1,323,773 + CSW01_06335 0.55 +0.1
1,323,781 - CSW01_06335 0.58 +1.0
1,323,796 + CSW01_06335 0.63 +0.2
1,323,801 + CSW01_06335 0.65 -1.0
1,323,804 - CSW01_06335 0.66 +1.2
1,323,804 - CSW01_06335 0.66 +0.3
1,323,814 - CSW01_06335 0.70 -1.0
1,323,847 + CSW01_06335 0.82 -3.1
1,323,902 - +0.5

Or see this region's nucleotide sequence