Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06180 and CSW01_06185 are separated by 26 nucleotides CSW01_06185 and CSW01_06190 are separated by 438 nucleotides CSW01_06190 and CSW01_06195 overlap by 17 nucleotides CSW01_06195 and CSW01_06200 overlap by 92 nucleotides
CSW01_06180: CSW01_06180 - phenylalanine--tRNA ligase subunit alpha, at 1,295,182 to 1,296,165
_06180
CSW01_06185: CSW01_06185 - phenylalanine--tRNA ligase subunit beta, at 1,296,192 to 1,298,579
_06185
CSW01_06190: CSW01_06190 - integration host factor subunit alpha, at 1,299,018 to 1,299,314
_06190
CSW01_06195: CSW01_06195 - hypothetical protein, at 1,299,298 to 1,299,534
_06195
CSW01_06200: CSW01_06200 - phosphoribosylglycinamide formyltransferase, at 1,299,443 to 1,300,222
_06200
Position (kb) 1296
1297
1298
1299 Strain fitness (log2 ratio) -1
0
1 at 1298.649 kb on + strand at 1299.390 kb on + strand, within CSW01_06195 at 1299.398 kb on - strand, within CSW01_06195 at 1299.418 kb on + strand, within CSW01_06195 at 1299.450 kb on + strand at 1299.554 kb on + strand, within CSW01_06200 at 1299.577 kb on + strand, within CSW01_06200
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,298,649 + +0.5 1,299,390 + CSW01_06195 0.39 +0.1 1,299,398 - CSW01_06195 0.42 +0.1 1,299,418 + CSW01_06195 0.51 +0.1 1,299,450 + -0.3 1,299,554 + CSW01_06200 0.14 +0.1 1,299,577 + CSW01_06200 0.17 -0.3
Or see this region's nucleotide sequence