Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06155

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06140 and CSW01_06145 are separated by 47 nucleotidesCSW01_06145 and CSW01_06150 are separated by 257 nucleotidesCSW01_06150 and CSW01_06155 are separated by 2 nucleotidesCSW01_06155 and CSW01_06160 are separated by 64 nucleotidesCSW01_06160 and CSW01_06165 are separated by 10 nucleotidesCSW01_06165 and CSW01_06170 are separated by 246 nucleotides CSW01_06140: CSW01_06140 - excinuclease ABC subunit C, at 1,289,961 to 1,291,793 _06140 CSW01_06145: CSW01_06145 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,291,841 to 1,292,398 _06145 CSW01_06150: CSW01_06150 - tRNA-Cys, at 1,292,656 to 1,292,729 _06150 CSW01_06155: CSW01_06155 - tRNA-Gly, at 1,292,732 to 1,292,807 _06155 CSW01_06160: CSW01_06160 - tRNA-Leu, at 1,292,872 to 1,292,958 _06160 CSW01_06165: CSW01_06165 - tRNA-Gly, at 1,292,969 to 1,293,044 _06165 CSW01_06170: CSW01_06170 - GGDEF domain-containing protein, at 1,293,291 to 1,294,409 _06170 Position (kb) 1292 1293Strain fitness (log2 ratio) -1 0 1at 1293.317 kb on - strandat 1293.317 kb on - strandat 1293.336 kb on - strandat 1293.336 kb on - strandat 1293.385 kb on + strandat 1293.422 kb on + strand, within CSW01_06170at 1293.462 kb on - strand, within CSW01_06170at 1293.467 kb on + strand, within CSW01_06170at 1293.467 kb on + strand, within CSW01_06170at 1293.537 kb on - strand, within CSW01_06170at 1293.702 kb on + strand, within CSW01_06170at 1293.702 kb on + strand, within CSW01_06170at 1293.702 kb on + strand, within CSW01_06170at 1293.709 kb on + strand, within CSW01_06170

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,293,317 - +0.7
1,293,317 - -0.3
1,293,336 - +0.3
1,293,336 - -0.8
1,293,385 + +0.9
1,293,422 + CSW01_06170 0.12 -0.4
1,293,462 - CSW01_06170 0.15 +0.4
1,293,467 + CSW01_06170 0.16 +1.1
1,293,467 + CSW01_06170 0.16 +0.4
1,293,537 - CSW01_06170 0.22 +0.1
1,293,702 + CSW01_06170 0.37 -1.4
1,293,702 + CSW01_06170 0.37 -0.2
1,293,702 + CSW01_06170 0.37 -0.3
1,293,709 + CSW01_06170 0.37 +1.3

Or see this region's nucleotide sequence