Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05910

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05905 and CSW01_05910 are separated by 291 nucleotidesCSW01_05910 and CSW01_05915 are separated by 96 nucleotidesCSW01_05915 and CSW01_05920 are separated by 101 nucleotides CSW01_05905: CSW01_05905 - DUF72 domain-containing protein, at 1,235,705 to 1,236,574 _05905 CSW01_05910: CSW01_05910 - aspartate--tRNA ligase, at 1,236,866 to 1,238,641 _05910 CSW01_05915: CSW01_05915 - thymidine kinase, at 1,238,738 to 1,239,316 _05915 CSW01_05920: CSW01_05920 - dicarboxylate/amino acid:cation symporter, at 1,239,418 to 1,240,674 _05920 Position (kb) 1236 1237 1238 1239Strain fitness (log2 ratio) -1 0 1at 1235.964 kb on - strand, within CSW01_05905at 1235.986 kb on - strand, within CSW01_05905at 1236.024 kb on + strand, within CSW01_05905at 1236.024 kb on + strand, within CSW01_05905at 1236.032 kb on - strand, within CSW01_05905at 1236.032 kb on - strand, within CSW01_05905at 1236.056 kb on + strand, within CSW01_05905at 1236.064 kb on - strand, within CSW01_05905at 1236.064 kb on - strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.301 kb on + strand, within CSW01_05905at 1236.301 kb on + strand, within CSW01_05905at 1236.303 kb on + strand, within CSW01_05905at 1236.309 kb on - strand, within CSW01_05905at 1236.347 kb on - strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.364 kb on - strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.400 kb on - strand, within CSW01_05905at 1236.402 kb on + strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.410 kb on - strand, within CSW01_05905at 1236.440 kb on - strand, within CSW01_05905at 1236.445 kb on - strand, within CSW01_05905at 1236.476 kb on + strand, within CSW01_05905at 1236.478 kb on + strand, within CSW01_05905at 1236.484 kb on - strand, within CSW01_05905at 1236.486 kb on - strand, within CSW01_05905at 1236.486 kb on - strand, within CSW01_05905at 1236.525 kb on - strandat 1236.533 kb on - strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.587 kb on + strandat 1236.587 kb on + strandat 1236.587 kb on + strandat 1236.587 kb on + strandat 1236.641 kb on - strandat 1236.668 kb on + strandat 1236.696 kb on - strandat 1238.665 kb on - strandat 1238.723 kb on + strandat 1238.749 kb on - strandat 1238.790 kb on - strandat 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.081 kb on - strand, within CSW01_05915at 1239.081 kb on - strand, within CSW01_05915at 1239.133 kb on - strand, within CSW01_05915at 1239.173 kb on - strand, within CSW01_05915at 1239.204 kb on + strand, within CSW01_05915at 1239.207 kb on - strand, within CSW01_05915at 1239.274 kb on - strandat 1239.503 kb on + strandat 1239.515 kb on + strandat 1239.594 kb on - strand, within CSW01_05920at 1239.594 kb on - strand, within CSW01_05920

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,235,964 - CSW01_05905 0.30 -0.9
1,235,986 - CSW01_05905 0.32 -0.6
1,236,024 + CSW01_05905 0.37 -0.1
1,236,024 + CSW01_05905 0.37 -0.3
1,236,032 - CSW01_05905 0.38 -0.1
1,236,032 - CSW01_05905 0.38 +0.1
1,236,056 + CSW01_05905 0.40 +0.9
1,236,064 - CSW01_05905 0.41 -1.1
1,236,064 - CSW01_05905 0.41 -0.5
1,236,148 + CSW01_05905 0.51 +0.8
1,236,148 + CSW01_05905 0.51 -0.7
1,236,148 + CSW01_05905 0.51 +0.4
1,236,148 + CSW01_05905 0.51 -1.7
1,236,156 - CSW01_05905 0.52 +0.8
1,236,156 - CSW01_05905 0.52 -0.3
1,236,156 - CSW01_05905 0.52 -0.5
1,236,156 - CSW01_05905 0.52 -0.2
1,236,301 + CSW01_05905 0.69 +0.4
1,236,301 + CSW01_05905 0.69 -0.4
1,236,303 + CSW01_05905 0.69 +0.8
1,236,309 - CSW01_05905 0.69 -0.8
1,236,347 - CSW01_05905 0.74 -0.1
1,236,349 + CSW01_05905 0.74 -1.0
1,236,349 + CSW01_05905 0.74 -0.2
1,236,349 + CSW01_05905 0.74 -0.5
1,236,349 + CSW01_05905 0.74 +0.0
1,236,357 - CSW01_05905 0.75 -0.0
1,236,357 - CSW01_05905 0.75 -0.5
1,236,357 - CSW01_05905 0.75 -0.1
1,236,357 - CSW01_05905 0.75 -0.4
1,236,357 - CSW01_05905 0.75 -0.4
1,236,357 - CSW01_05905 0.75 +0.4
1,236,357 - CSW01_05905 0.75 +0.2
1,236,357 - CSW01_05905 0.75 -0.2
1,236,357 - CSW01_05905 0.75 +0.4
1,236,364 - CSW01_05905 0.76 -0.5
1,236,397 + CSW01_05905 0.80 -0.4
1,236,397 + CSW01_05905 0.80 -0.4
1,236,397 + CSW01_05905 0.80 +0.2
1,236,400 - CSW01_05905 0.80 -0.5
1,236,402 + CSW01_05905 0.80 -0.3
1,236,405 - CSW01_05905 0.80 +0.3
1,236,405 - CSW01_05905 0.80 -0.3
1,236,405 - CSW01_05905 0.80 +0.6
1,236,410 - CSW01_05905 0.81 +0.9
1,236,440 - CSW01_05905 0.84 -0.2
1,236,445 - CSW01_05905 0.85 +0.2
1,236,476 + CSW01_05905 0.89 -1.7
1,236,478 + CSW01_05905 0.89 +0.1
1,236,484 - CSW01_05905 0.90 +0.5
1,236,486 - CSW01_05905 0.90 -1.1
1,236,486 - CSW01_05905 0.90 -1.0
1,236,525 - -0.4
1,236,533 - +0.3
1,236,538 + +0.3
1,236,538 + -0.4
1,236,538 + -0.5
1,236,538 + +0.3
1,236,538 + +0.2
1,236,546 - +1.1
1,236,546 - -0.6
1,236,546 - -0.4
1,236,546 - +1.0
1,236,546 - +0.0
1,236,546 - +0.6
1,236,587 + -0.1
1,236,587 + +0.5
1,236,587 + -0.4
1,236,587 + +0.5
1,236,641 - +0.1
1,236,668 + -0.2
1,236,696 - -0.4
1,238,665 - +0.4
1,238,723 + -0.1
1,238,749 - -0.1
1,238,790 - -0.0
1,239,073 + CSW01_05915 0.58 -1.2
1,239,073 + CSW01_05915 0.58 -0.4
1,239,073 + CSW01_05915 0.58 +0.3
1,239,073 + CSW01_05915 0.58 +0.5
1,239,081 - CSW01_05915 0.59 -0.1
1,239,081 - CSW01_05915 0.59 -0.4
1,239,133 - CSW01_05915 0.68 -1.3
1,239,173 - CSW01_05915 0.75 -0.5
1,239,204 + CSW01_05915 0.80 +0.3
1,239,207 - CSW01_05915 0.81 -0.6
1,239,274 - -0.4
1,239,503 + -0.3
1,239,515 + +0.0
1,239,594 - CSW01_05920 0.14 +0.3
1,239,594 - CSW01_05920 0.14 +0.3

Or see this region's nucleotide sequence