Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05165 and CSW01_05170 overlap by 73 nucleotides CSW01_05170 and CSW01_05175 overlap by 1 nucleotides CSW01_05175 and CSW01_05180 are separated by 219 nucleotides CSW01_05180 and CSW01_05185 are separated by 586 nucleotides
CSW01_05165: CSW01_05165 - electron transport complex subunit RsxC, at 1,082,147 to 1,084,552
_05165
CSW01_05170: CSW01_05170 - electron transport complex subunit B, at 1,084,480 to 1,085,067
_05170
CSW01_05175: CSW01_05175 - electron transport complex subunit A, at 1,085,067 to 1,085,648
_05175
CSW01_05180: CSW01_05180 - tRNA-Asn, at 1,085,868 to 1,085,943
_05180
CSW01_05185: CSW01_05185 - excinuclease ABC subunit UvrB, at 1,086,530 to 1,088,560
_05185
Position (kb)
1085
1086 Strain fitness (log2 ratio)
-2
-1
0
1 at 1084.573 kb on - strand, within CSW01_05170 at 1085.678 kb on + strand at 1085.912 kb on - strand, within CSW01_05180 at 1086.071 kb on - strand at 1086.074 kb on - strand at 1086.328 kb on - strand at 1086.390 kb on + strand at 1086.390 kb on + strand at 1086.398 kb on - strand at 1086.423 kb on + strand at 1086.443 kb on - strand at 1086.506 kb on + strand at 1086.559 kb on + strand at 1086.609 kb on + strand at 1086.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,084,573 - CSW01_05170 0.16 +0.4 1,085,678 + +0.9 1,085,912 - CSW01_05180 0.58 +0.6 1,086,071 - +0.0 1,086,074 - +0.3 1,086,328 - -0.4 1,086,390 + +0.1 1,086,390 + +0.2 1,086,398 - -0.1 1,086,423 + -2.5 1,086,443 - -0.9 1,086,506 + +0.1 1,086,559 + +0.3 1,086,609 + +0.2 1,086,641 - -0.1
Or see this region's nucleotide sequence