Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05170

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05165 and CSW01_05170 overlap by 73 nucleotidesCSW01_05170 and CSW01_05175 overlap by 1 nucleotidesCSW01_05175 and CSW01_05180 are separated by 219 nucleotides CSW01_05165: CSW01_05165 - electron transport complex subunit RsxC, at 1,082,147 to 1,084,552 _05165 CSW01_05170: CSW01_05170 - electron transport complex subunit B, at 1,084,480 to 1,085,067 _05170 CSW01_05175: CSW01_05175 - electron transport complex subunit A, at 1,085,067 to 1,085,648 _05175 CSW01_05180: CSW01_05180 - tRNA-Asn, at 1,085,868 to 1,085,943 _05180 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -1 0 1at 1084.573 kb on - strand, within CSW01_05170at 1085.678 kb on + strandat 1085.912 kb on - strand, within CSW01_05180

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,084,573 - CSW01_05170 0.16 +0.4
1,085,678 + +0.9
1,085,912 - CSW01_05180 0.58 +0.6

Or see this region's nucleotide sequence