Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05160

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05150 and CSW01_05155 are separated by 1 nucleotidesCSW01_05155 and CSW01_05160 are separated by 11 nucleotidesCSW01_05160 and CSW01_05165 overlap by 1 nucleotides CSW01_05150: CSW01_05150 - electron transport complex subunit E, at 1,079,766 to 1,080,458 _05150 CSW01_05155: CSW01_05155 - electron transport complex subunit G, at 1,080,460 to 1,081,089 _05155 CSW01_05160: CSW01_05160 - electron transport complex subunit D, at 1,081,101 to 1,082,147 _05160 CSW01_05165: CSW01_05165 - electron transport complex subunit RsxC, at 1,082,147 to 1,084,552 _05165 Position (kb) 1081 1082 1083Strain fitness (log2 ratio) -2 -1 0 1at 1080.469 kb on - strandat 1082.269 kb on - strandat 1082.518 kb on - strand, within CSW01_05165at 1082.638 kb on - strand, within CSW01_05165at 1082.638 kb on - strand, within CSW01_05165

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,080,469 - -1.2
1,082,269 - +0.1
1,082,518 - CSW01_05165 0.15 -0.5
1,082,638 - CSW01_05165 0.20 -2.2
1,082,638 - CSW01_05165 0.20 +0.1

Or see this region's nucleotide sequence