Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05140 and CSW01_05145 are separated by 40 nucleotides CSW01_05145 and CSW01_05150 are separated by 26 nucleotides CSW01_05150 and CSW01_05155 are separated by 1 nucleotides CSW01_05155 and CSW01_05160 are separated by 11 nucleotides
CSW01_05140: CSW01_05140 - lactoylglutathione lyase, at 1,078,641 to 1,079,057
_05140
CSW01_05145: CSW01_05145 - endonuclease III, at 1,079,098 to 1,079,739
_05145
CSW01_05150: CSW01_05150 - electron transport complex subunit E, at 1,079,766 to 1,080,458
_05150
CSW01_05155: CSW01_05155 - electron transport complex subunit G, at 1,080,460 to 1,081,089
_05155
CSW01_05160: CSW01_05160 - electron transport complex subunit D, at 1,081,101 to 1,082,147
_05160
Position (kb) 1079
1080
1081 Strain fitness (log2 ratio) -1
0
1 at 1078.777 kb on + strand, within CSW01_05140 at 1078.869 kb on + strand, within CSW01_05140 at 1078.975 kb on - strand, within CSW01_05140 at 1079.053 kb on + strand at 1079.108 kb on + strand at 1079.175 kb on + strand, within CSW01_05145 at 1079.232 kb on + strand, within CSW01_05145 at 1079.243 kb on + strand, within CSW01_05145 at 1079.254 kb on + strand, within CSW01_05145 at 1079.301 kb on + strand, within CSW01_05145 at 1079.320 kb on - strand, within CSW01_05145 at 1079.355 kb on - strand, within CSW01_05145 at 1079.390 kb on + strand, within CSW01_05145 at 1079.435 kb on + strand, within CSW01_05145 at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.775 kb on + strand at 1079.790 kb on + strand at 1079.790 kb on + strand at 1079.798 kb on - strand at 1080.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,078,777 + CSW01_05140 0.33 +0.0 1,078,869 + CSW01_05140 0.55 +1.7 1,078,975 - CSW01_05140 0.80 -0.4 1,079,053 + -0.1 1,079,108 + +0.1 1,079,175 + CSW01_05145 0.12 -0.3 1,079,232 + CSW01_05145 0.21 -0.1 1,079,243 + CSW01_05145 0.23 +0.6 1,079,254 + CSW01_05145 0.24 +0.3 1,079,301 + CSW01_05145 0.32 -0.3 1,079,320 - CSW01_05145 0.35 +0.9 1,079,355 - CSW01_05145 0.40 -0.3 1,079,390 + CSW01_05145 0.45 +0.5 1,079,435 + CSW01_05145 0.52 -0.7 1,079,772 - -1.0 1,079,772 - +0.0 1,079,772 - -0.0 1,079,775 + +0.2 1,079,790 + +0.3 1,079,790 + +1.4 1,079,798 - -0.3 1,080,469 - -1.2
Or see this region's nucleotide sequence