Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05095 and CSW01_05100 are separated by 44 nucleotides CSW01_05100 and CSW01_05105 are separated by 0 nucleotides CSW01_05105 and CSW01_05110 are separated by 62 nucleotides
CSW01_05095: CSW01_05095 - acetyl-CoA carboxylase carboxyl transferase subunit beta, at 1,069,673 to 1,070,599
_05095
CSW01_05100: CSW01_05100 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 1,070,644 to 1,071,909
_05100
CSW01_05105: CSW01_05105 - SPOR domain-containing protein, at 1,071,910 to 1,072,506
_05105
CSW01_05110: CSW01_05110 - bacteriocin production protein, at 1,072,569 to 1,073,060
_05110
Position (kb) 1070
1071
1072 Strain fitness (log2 ratio) -1
0
1 at 1072.143 kb on + strand, within CSW01_05105 at 1072.566 kb on + strand at 1072.650 kb on + strand, within CSW01_05110 at 1072.658 kb on - strand, within CSW01_05110 at 1072.703 kb on - strand, within CSW01_05110 at 1072.785 kb on + strand, within CSW01_05110 at 1072.896 kb on + strand, within CSW01_05110
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,072,143 + CSW01_05105 0.39 +1.0 1,072,566 + -0.6 1,072,650 + CSW01_05110 0.16 -0.1 1,072,658 - CSW01_05110 0.18 -0.0 1,072,703 - CSW01_05110 0.27 -0.4 1,072,785 + CSW01_05110 0.44 -0.7 1,072,896 + CSW01_05110 0.66 -0.2
Or see this region's nucleotide sequence