Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04955

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04950 and CSW01_04955 are separated by 229 nucleotidesCSW01_04955 and CSW01_04960 are separated by 132 nucleotides CSW01_04950: CSW01_04950 - sulfate transporter CysZ, at 1,032,001 to 1,032,753 _04950 CSW01_04955: CSW01_04955 - cell division protein ZipA, at 1,032,983 to 1,033,858 _04955 CSW01_04960: CSW01_04960 - DNA ligase (NAD(+)) LigA, at 1,033,991 to 1,036,000 _04960 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1032.014 kb on + strandat 1032.015 kb on - strandat 1032.088 kb on - strand, within CSW01_04950at 1032.164 kb on + strand, within CSW01_04950at 1032.264 kb on + strand, within CSW01_04950at 1032.264 kb on + strand, within CSW01_04950at 1032.264 kb on + strand, within CSW01_04950at 1032.264 kb on + strand, within CSW01_04950at 1032.272 kb on - strand, within CSW01_04950at 1032.272 kb on - strand, within CSW01_04950at 1032.272 kb on - strand, within CSW01_04950at 1032.272 kb on - strand, within CSW01_04950at 1032.272 kb on - strand, within CSW01_04950at 1032.273 kb on - strand, within CSW01_04950at 1032.282 kb on + strand, within CSW01_04950at 1032.282 kb on + strand, within CSW01_04950at 1032.284 kb on + strand, within CSW01_04950at 1032.301 kb on - strand, within CSW01_04950at 1032.311 kb on - strand, within CSW01_04950at 1032.311 kb on - strand, within CSW01_04950at 1032.325 kb on - strand, within CSW01_04950at 1032.337 kb on - strand, within CSW01_04950at 1032.356 kb on - strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.374 kb on + strand, within CSW01_04950at 1032.382 kb on - strand, within CSW01_04950at 1032.382 kb on - strand, within CSW01_04950at 1032.427 kb on - strand, within CSW01_04950at 1032.427 kb on - strand, within CSW01_04950at 1032.540 kb on + strand, within CSW01_04950at 1032.548 kb on - strand, within CSW01_04950at 1032.578 kb on + strand, within CSW01_04950at 1032.619 kb on + strand, within CSW01_04950at 1032.632 kb on - strand, within CSW01_04950at 1032.647 kb on + strand, within CSW01_04950at 1032.647 kb on + strand, within CSW01_04950at 1032.740 kb on + strandat 1032.850 kb on - strandat 1032.938 kb on - strandat 1033.830 kb on + strandat 1033.898 kb on + strandat 1033.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,032,014 + +0.1
1,032,015 - +0.2
1,032,088 - CSW01_04950 0.12 -0.4
1,032,164 + CSW01_04950 0.22 -0.1
1,032,264 + CSW01_04950 0.35 +2.9
1,032,264 + CSW01_04950 0.35 +0.2
1,032,264 + CSW01_04950 0.35 -0.6
1,032,264 + CSW01_04950 0.35 -0.3
1,032,272 - CSW01_04950 0.36 +0.5
1,032,272 - CSW01_04950 0.36 +0.1
1,032,272 - CSW01_04950 0.36 -0.6
1,032,272 - CSW01_04950 0.36 +0.8
1,032,272 - CSW01_04950 0.36 -0.2
1,032,273 - CSW01_04950 0.36 +0.4
1,032,282 + CSW01_04950 0.37 +0.5
1,032,282 + CSW01_04950 0.37 -0.4
1,032,284 + CSW01_04950 0.38 -0.7
1,032,301 - CSW01_04950 0.40 -0.3
1,032,311 - CSW01_04950 0.41 -0.4
1,032,311 - CSW01_04950 0.41 -0.0
1,032,325 - CSW01_04950 0.43 -0.5
1,032,337 - CSW01_04950 0.45 +0.4
1,032,356 - CSW01_04950 0.47 -0.6
1,032,374 + CSW01_04950 0.50 +0.2
1,032,374 + CSW01_04950 0.50 -0.3
1,032,374 + CSW01_04950 0.50 -0.0
1,032,374 + CSW01_04950 0.50 +0.0
1,032,374 + CSW01_04950 0.50 -0.1
1,032,374 + CSW01_04950 0.50 +0.4
1,032,374 + CSW01_04950 0.50 -0.5
1,032,374 + CSW01_04950 0.50 -1.2
1,032,382 - CSW01_04950 0.51 -0.2
1,032,382 - CSW01_04950 0.51 +0.1
1,032,427 - CSW01_04950 0.57 -0.4
1,032,427 - CSW01_04950 0.57 +0.5
1,032,540 + CSW01_04950 0.72 +0.7
1,032,548 - CSW01_04950 0.73 -2.0
1,032,578 + CSW01_04950 0.77 -0.3
1,032,619 + CSW01_04950 0.82 -0.4
1,032,632 - CSW01_04950 0.84 +0.9
1,032,647 + CSW01_04950 0.86 -0.1
1,032,647 + CSW01_04950 0.86 -2.1
1,032,740 + -0.4
1,032,850 - +1.2
1,032,938 - -1.3
1,033,830 + +0.5
1,033,898 + -0.3
1,033,952 + +1.1

Or see this region's nucleotide sequence