Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04925

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04920 and CSW01_04925 are separated by 112 nucleotidesCSW01_04925 and CSW01_04930 are separated by 108 nucleotides CSW01_04920: CSW01_04920 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,026,576 to 1,027,769 _04920 CSW01_04925: CSW01_04925 - PTS glucose transporter subunit IIA, at 1,027,882 to 1,028,391 _04925 CSW01_04930: CSW01_04930 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 1,028,500 to 1,030,221 _04930 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1at 1027.742 kb on + strandat 1027.757 kb on - strandat 1027.833 kb on + strandat 1027.969 kb on - strand, within CSW01_04925at 1028.138 kb on - strand, within CSW01_04925at 1028.393 kb on + strandat 1028.401 kb on + strandat 1028.433 kb on + strandat 1028.518 kb on + strandat 1028.549 kb on + strandat 1028.842 kb on + strand, within CSW01_04930at 1028.850 kb on - strand, within CSW01_04930at 1028.907 kb on - strand, within CSW01_04930at 1028.990 kb on + strand, within CSW01_04930at 1028.998 kb on - strand, within CSW01_04930at 1028.998 kb on - strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.114 kb on + strand, within CSW01_04930at 1029.126 kb on + strand, within CSW01_04930at 1029.134 kb on - strand, within CSW01_04930at 1029.134 kb on - strand, within CSW01_04930at 1029.144 kb on + strand, within CSW01_04930at 1029.237 kb on - strand, within CSW01_04930

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,027,742 + -0.5
1,027,757 - -0.8
1,027,833 + -0.6
1,027,969 - CSW01_04925 0.17 +0.1
1,028,138 - CSW01_04925 0.50 +0.5
1,028,393 + -0.8
1,028,401 + -1.2
1,028,433 + +0.0
1,028,518 + -0.9
1,028,549 + +0.8
1,028,842 + CSW01_04930 0.20 +0.3
1,028,850 - CSW01_04930 0.20 -1.5
1,028,907 - CSW01_04930 0.24 -2.2
1,028,990 + CSW01_04930 0.28 -1.2
1,028,998 - CSW01_04930 0.29 -0.1
1,028,998 - CSW01_04930 0.29 -2.1
1,029,075 + CSW01_04930 0.33 -0.4
1,029,075 + CSW01_04930 0.33 -0.5
1,029,075 + CSW01_04930 0.33 -0.0
1,029,114 + CSW01_04930 0.36 -0.7
1,029,126 + CSW01_04930 0.36 -0.7
1,029,134 - CSW01_04930 0.37 +0.3
1,029,134 - CSW01_04930 0.37 -1.0
1,029,144 + CSW01_04930 0.37 -1.2
1,029,237 - CSW01_04930 0.43 -1.7

Or see this region's nucleotide sequence