Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04680

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04665 and CSW01_04670 are separated by 178 nucleotidesCSW01_04670 and CSW01_04675 are separated by 84 nucleotidesCSW01_04675 and CSW01_04680 are separated by 84 nucleotidesCSW01_04680 and CSW01_04685 are separated by 85 nucleotidesCSW01_04685 and CSW01_04690 are separated by 285 nucleotides CSW01_04665: CSW01_04665 - alpha,alpha-phosphotrehalase, at 970,043 to 971,731 _04665 CSW01_04670: CSW01_04670 - tRNA-Tyr, at 971,910 to 971,994 _04670 CSW01_04675: CSW01_04675 - tRNA-Tyr, at 972,079 to 972,163 _04675 CSW01_04680: CSW01_04680 - tRNA-Tyr, at 972,248 to 972,332 _04680 CSW01_04685: CSW01_04685 - tRNA-Tyr, at 972,418 to 972,502 _04685 CSW01_04690: CSW01_04690 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 972,788 to 973,846 _04690 Position (kb) 972 973Strain fitness (log2 ratio) -2 -1 0 1at 972.674 kb on + strandat 972.674 kb on + strandat 972.674 kb on + strandat 972.817 kb on - strandat 972.838 kb on - strandat 972.840 kb on + strandat 972.840 kb on + strandat 972.845 kb on + strandat 972.845 kb on + strandat 972.848 kb on - strandat 972.848 kb on - strandat 972.896 kb on + strand, within CSW01_04690at 972.940 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.995 kb on + strand, within CSW01_04690at 973.090 kb on + strand, within CSW01_04690at 973.117 kb on + strand, within CSW01_04690at 973.138 kb on - strand, within CSW01_04690at 973.224 kb on - strand, within CSW01_04690at 973.262 kb on - strand, within CSW01_04690

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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972,674 + +0.2
972,674 + -0.0
972,674 + -0.8
972,817 - +0.6
972,838 - +0.3
972,840 + -0.5
972,840 + -0.2
972,845 + +0.2
972,845 + +0.4
972,848 - -1.4
972,848 - -0.2
972,896 + CSW01_04690 0.10 +0.3
972,940 + CSW01_04690 0.14 +0.1
972,946 + CSW01_04690 0.15 +0.1
972,946 + CSW01_04690 0.15 +0.4
972,946 + CSW01_04690 0.15 +0.2
972,946 + CSW01_04690 0.15 +0.5
972,946 + CSW01_04690 0.15 -0.3
972,946 + CSW01_04690 0.15 -1.5
972,946 + CSW01_04690 0.15 -1.5
972,946 + CSW01_04690 0.15 +0.2
972,946 + CSW01_04690 0.15 +0.9
972,946 + CSW01_04690 0.15 +0.6
972,946 + CSW01_04690 0.15 +0.6
972,946 + CSW01_04690 0.15 -0.0
972,946 + CSW01_04690 0.15 -0.3
972,946 + CSW01_04690 0.15 -0.3
972,946 + CSW01_04690 0.15 -1.8
972,946 + CSW01_04690 0.15 +0.4
972,946 + CSW01_04690 0.15 -0.6
972,946 + CSW01_04690 0.15 +0.3
972,946 + CSW01_04690 0.15 +0.1
972,946 + CSW01_04690 0.15 +0.3
972,954 - CSW01_04690 0.16 +0.0
972,954 - CSW01_04690 0.16 -0.1
972,954 - CSW01_04690 0.16 -0.9
972,954 - CSW01_04690 0.16 -0.2
972,954 - CSW01_04690 0.16 -0.0
972,954 - CSW01_04690 0.16 -0.4
972,954 - CSW01_04690 0.16 -0.5
972,954 - CSW01_04690 0.16 +0.6
972,954 - CSW01_04690 0.16 +0.1
972,954 - CSW01_04690 0.16 +0.5
972,954 - CSW01_04690 0.16 -0.8
972,954 - CSW01_04690 0.16 +0.6
972,954 - CSW01_04690 0.16 -0.9
972,954 - CSW01_04690 0.16 -0.1
972,954 - CSW01_04690 0.16 -0.3
972,954 - CSW01_04690 0.16 +0.1
972,995 + CSW01_04690 0.20 +0.3
973,090 + CSW01_04690 0.29 -0.2
973,117 + CSW01_04690 0.31 -0.8
973,138 - CSW01_04690 0.33 -0.0
973,224 - CSW01_04690 0.41 +0.1
973,262 - CSW01_04690 0.45 +0.0

Or see this region's nucleotide sequence