Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04665

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04660 and CSW01_04665 are separated by 79 nucleotidesCSW01_04665 and CSW01_04670 are separated by 178 nucleotidesCSW01_04670 and CSW01_04675 are separated by 84 nucleotidesCSW01_04675 and CSW01_04680 are separated by 84 nucleotidesCSW01_04680 and CSW01_04685 are separated by 85 nucleotides CSW01_04660: CSW01_04660 - PTS trehalose transporter subunit IIBC, at 968,527 to 969,963 _04660 CSW01_04665: CSW01_04665 - alpha,alpha-phosphotrehalase, at 970,043 to 971,731 _04665 CSW01_04670: CSW01_04670 - tRNA-Tyr, at 971,910 to 971,994 _04670 CSW01_04675: CSW01_04675 - tRNA-Tyr, at 972,079 to 972,163 _04675 CSW01_04680: CSW01_04680 - tRNA-Tyr, at 972,248 to 972,332 _04680 CSW01_04685: CSW01_04685 - tRNA-Tyr, at 972,418 to 972,502 _04685 Position (kb) 970 971 972Strain fitness (log2 ratio) -2 -1 0 1at 969.104 kb on + strand, within CSW01_04660at 969.104 kb on + strand, within CSW01_04660at 969.112 kb on - strand, within CSW01_04660at 969.119 kb on - strand, within CSW01_04660at 969.154 kb on - strand, within CSW01_04660at 969.228 kb on + strand, within CSW01_04660at 969.236 kb on - strand, within CSW01_04660at 969.241 kb on + strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.250 kb on + strand, within CSW01_04660at 969.256 kb on + strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660at 969.349 kb on + strand, within CSW01_04660at 969.383 kb on - strand, within CSW01_04660at 969.449 kb on + strand, within CSW01_04660at 969.459 kb on + strand, within CSW01_04660at 969.478 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.623 kb on + strand, within CSW01_04660at 969.623 kb on + strand, within CSW01_04660at 969.631 kb on - strand, within CSW01_04660at 969.655 kb on - strand, within CSW01_04660at 969.692 kb on - strand, within CSW01_04660at 969.745 kb on - strand, within CSW01_04660at 969.769 kb on + strand, within CSW01_04660at 969.777 kb on - strand, within CSW01_04660at 969.792 kb on - strand, within CSW01_04660at 969.854 kb on - strandat 969.898 kb on + strandat 969.898 kb on + strandat 969.915 kb on + strandat 969.921 kb on - strandat 969.923 kb on - strandat 970.040 kb on + strandat 970.050 kb on + strandat 970.731 kb on + strand, within CSW01_04665at 970.845 kb on - strand, within CSW01_04665at 972.674 kb on + strandat 972.674 kb on + strandat 972.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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969,104 + CSW01_04660 0.40 -0.6
969,104 + CSW01_04660 0.40 +0.3
969,112 - CSW01_04660 0.41 -1.0
969,119 - CSW01_04660 0.41 -0.0
969,154 - CSW01_04660 0.44 +0.2
969,228 + CSW01_04660 0.49 -0.2
969,236 - CSW01_04660 0.49 -0.0
969,241 + CSW01_04660 0.50 -0.4
969,249 - CSW01_04660 0.50 -0.1
969,249 - CSW01_04660 0.50 -0.1
969,250 + CSW01_04660 0.50 +0.5
969,256 + CSW01_04660 0.51 +0.5
969,264 - CSW01_04660 0.51 -0.8
969,264 - CSW01_04660 0.51 -0.2
969,349 + CSW01_04660 0.57 -0.8
969,383 - CSW01_04660 0.60 +0.1
969,449 + CSW01_04660 0.64 -0.3
969,459 + CSW01_04660 0.65 +0.2
969,478 + CSW01_04660 0.66 -0.1
969,576 + CSW01_04660 0.73 +0.1
969,576 + CSW01_04660 0.73 -0.1
969,576 + CSW01_04660 0.73 +0.1
969,576 + CSW01_04660 0.73 -0.2
969,576 + CSW01_04660 0.73 -0.1
969,576 + CSW01_04660 0.73 -0.3
969,576 + CSW01_04660 0.73 -0.2
969,576 + CSW01_04660 0.73 -0.0
969,576 + CSW01_04660 0.73 -0.8
969,576 + CSW01_04660 0.73 +1.3
969,584 - CSW01_04660 0.74 +0.3
969,584 - CSW01_04660 0.74 -0.2
969,584 - CSW01_04660 0.74 +0.1
969,584 - CSW01_04660 0.74 -0.7
969,584 - CSW01_04660 0.74 +0.1
969,584 - CSW01_04660 0.74 -0.6
969,584 - CSW01_04660 0.74 +0.2
969,584 - CSW01_04660 0.74 -0.9
969,584 - CSW01_04660 0.74 -2.7
969,623 + CSW01_04660 0.76 -0.2
969,623 + CSW01_04660 0.76 -1.4
969,631 - CSW01_04660 0.77 -0.6
969,655 - CSW01_04660 0.78 -0.2
969,692 - CSW01_04660 0.81 +0.9
969,745 - CSW01_04660 0.85 -0.6
969,769 + CSW01_04660 0.86 -0.1
969,777 - CSW01_04660 0.87 -1.4
969,792 - CSW01_04660 0.88 -0.1
969,854 - +0.1
969,898 + +0.9
969,898 + -0.5
969,915 + -0.5
969,921 - -0.4
969,923 - +0.4
970,040 + +0.1
970,050 + -2.7
970,731 + CSW01_04665 0.41 -2.3
970,845 - CSW01_04665 0.47 +0.5
972,674 + +0.2
972,674 + -0.0
972,674 + -0.8

Or see this region's nucleotide sequence